Login
Help

GENE CARD

Submit your Data

  1. > 
  2. Gene 'KH2012:KH.C3.17' > 

Gene Card

Best human hits

SOX14; SOX2; SOX21

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001283

Gene Model ID

KH2012:KH.C1.99

Location

KhC1:1491497..1495325

Transcript Models and Sequences

  KH2012:KH.C1.99.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006005
NCBI Reference Sequence NM_001128858.1
Collections

Gateway full ORF

2 results

cima873139

Plate: VES67_A04

cien133997

Plate: VES91_I06

Gene collection 1 (N. Satoh)

2 results

ciad002g15

Plate: R1CiGC01k09

citb019m13

Plate: R1CiGC31c22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

3 results

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom SMART High mobility group box domain
HMG_box_dom_sf Gene3D High mobility group box domain superfamily
HMG_box_dom Pfam High mobility group box domain
HMG_box_dom ProSiteProfiles High mobility group box domain
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily

GOSlim

58 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
response to wounding Orthology biological process
regulation of gene expression Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
negative regulation of canonical Wnt signaling pathway Orthology biological process
central nervous system development Orthology biological process
cell differentiation Orthology biological process
negative regulation of nucleic acid-templated transcription Orthology biological process
animal organ development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
brain development Orthology biological process
cell adhesion Orthology biological process
developmental process Orthology biological process
RNA binding Orthology molecular function
anatomical structure development Orthology biological process
wound healing Orthology biological process
endopeptidase activity Orthology molecular function
regulation of apoptotic process Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
protein phosphorylation Orthology biological process
nuclear part Orthology cellular component
cell development Orthology biological process
neuron differentiation Orthology biological process
negative regulation of cell proliferation Orthology biological process
response to organic substance Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
cell migration Orthology biological process
generation of neurons Orthology biological process
anatomical structure morphogenesis Orthology biological process
reproductive process Orthology biological process
neuron development Orthology biological process
head development Orthology biological process

GO (Orthology)

68 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
transcription regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
osteoblast differentiation Hs biological process
eye development Hs biological process
endodermal cell fate specification Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
cell cycle arrest Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
response to wounding Hs biological process
regulation of gene expression Hs biological process
cytokine-mediated signaling pathway Hs biological process
pituitary gland development Hs biological process
adenohypophysis development Hs biological process
positive regulation of cell-cell adhesion Hs biological process
forebrain development Hs biological process
somatic stem cell population maintenance Hs biological process
miRNA binding Hs molecular function
tissue regeneration Hs biological process
regulation of cysteine-type endopeptidase activity involved in apoptotic process Hs biological process
positive regulation of MAPK cascade Hs biological process
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
nuclear transcription factor complex Hs cellular component
positive regulation of cell differentiation Hs biological process
negative regulation of neuron differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
inner ear development Hs biological process
negative regulation of epithelial cell proliferation Hs biological process
response to growth factor Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
neuronal stem cell population maintenance Hs biological process
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function
core promoter sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription corepressor activity Hs molecular function
neuron migration Hs biological process
lens morphogenesis in camera-type eye Hs biological process
central nervous system development Hs biological process
sensory organ development Hs biological process
sex determination Hs biological process
male gonad development Hs biological process
ventral spinal cord interneuron specification Hs biological process
hypothalamus development Hs biological process
forebrain neuron differentiation Hs biological process
forebrain neuron development Hs biological process
cell differentiation Hs biological process
negative regulation of striated muscle tissue development Hs biological process
myoblast development Hs biological process
face development Hs biological process
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 174 2.99e-51
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 163 1.43e-47
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 174 2.99e-51
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 174 2.99e-51
DNA binding Hs molecular function 174 2.99e-51
chromatin binding Hs molecular function 161 4.67e-47
transcription factor activity, sequence-specific DNA binding Hs molecular function 174 2.99e-51
protein binding Hs molecular function 174 2.99e-51
nucleus Hs cellular component 174 2.99e-51
nucleoplasm Hs cellular component 174 2.99e-51
transcription factor complex Hs cellular component 174 2.99e-51
cytoplasm Hs cellular component 174 2.99e-51
cytosol Hs cellular component 174 2.99e-51
miRNA binding Hs molecular function 174 2.99e-51
sequence-specific DNA binding Hs molecular function 174 2.99e-51
transcription regulatory region DNA binding Hs molecular function 174 2.99e-51
nuclear transcription factor complex Hs cellular component 161 4.67e-47
protein heterodimerization activity Hs molecular function 161 4.67e-47

GO (InterProScan)

No result

GO Term Analysis Type e-value

Back to Top