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GENE CARD

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  1. Gene 'KH2012:KH.C1.922'

Gene Card

Best human hits

BARHL1; BARHL2; TLX1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001210

Gene Model ID

KH2012:KH.C1.922

Location

KhC1:824050..834047

Transcript Models and Sequences

  KH2012:KH.C1.922.v1.A.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000002052
Collections

Gene collection 1 (N. Satoh)

1 result

citb089b03

Plate: R1CiGC46n15

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

10 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom CDD Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom Pfam Homeobox domain
Homeobox_dom SMART Homeobox domain
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_dom ProSiteProfiles Homeobox domain

GOSlim

19 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
sensory perception of sound Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
cell migration Orthology biological process
generation of neurons Orthology biological process
brain development Orthology biological process
negative regulation of apoptotic process Orthology biological process

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
neuron migration Hs biological process
DNA binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
sensory perception of sound Hs biological process
midbrain development Hs biological process
negative regulation of neuron apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 91.3 6.03e-20
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 85.9 3.99e-18
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 91.3 6.03e-20
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 91.3 6.03e-20
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 91.3 6.03e-20
DNA binding Hs molecular function 91.3 6.03e-20
transcription factor activity, sequence-specific DNA binding Hs molecular function 87.8 1.71e-18
protein binding Hs molecular function 87.8 1.71e-18
nucleus Hs cellular component 91.3 6.03e-20
sequence-specific DNA binding Hs molecular function 91.3 6.03e-20

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 2.4E-27
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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