Aniseed - Gene card

Gene 'KH2012:KH.C1.832'

Gene Card

Best human hits

FGL1; FGL2; FIBCD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001110

Gene Model ID

KH2012:KH.C1.832

Location

KhC1:1745745..1753093

Transcript Models and Sequences

KH2012:KH.C1.832.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004800
ENSEMBL	ENSCING00000019802
NCBI Reference Sequence	NM_001032433.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

citb011p18

Plate: R1CiGC30g10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

5 results

Ci-fibrn -3016/38 REG00000825 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Fibrinogen-like_C	SUPERFAMILY	Fibrinogen-like, C-terminal
Fibrinogen_CS	ProSitePatterns	Fibrinogen, conserved site
Fibrinogen_a/b/g_C_dom	Pfam	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom	ProSiteProfiles	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom	CDD	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom	SMART	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
peptidase activity	Blast	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
metal ion binding	Blast	molecular function
extracellular exosome	Blast	cellular component
extracellular space	Blast	cellular component
macromolecular complex	Blast	cellular component
carbohydrate derivative binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	182	6.58e-51
extracellular region	Hs	cellular component	232	1.61e-69
fibrinogen complex	Hs	cellular component	232	1.61e-69
chitin binding	Hs	molecular function	182	6.58e-51
peptidase activity	Hs	molecular function	232	1.61e-69
membrane	Hs	cellular component	182	6.58e-51
integral component of membrane	Hs	cellular component	182	6.58e-51
metal ion binding	Hs	molecular function	182	6.58e-51
extracellular exosome	Hs	cellular component	232	1.61e-69
ficolin-1-rich granule lumen	Hs	cellular component	232	1.61e-69

GO (InterProScan)