Aniseed - Gene card

Gene Card

Best human hits

POC1B; RACK1; WDR5B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001107

Gene Model ID

KH2012:KH.C1.83

Location

KhC1:9714254..9718192

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004025
NCBI Reference Sequence	XM_002123071.2
NCBI Reference Sequence	XM_018811706.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

cigd013l11

Plate: R1CiGC41c04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
WD40_repeat_CS	ProSitePatterns	WD40 repeat, conserved site
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40_repeat	Pfam	WD40 repeat
G-protein_beta_WD-40_rep	PRINTS	G-protein beta WD-40 repeat
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat	SMART	WD40 repeat
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily

GOSlim

67 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
receptor binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
centrosome	Blast	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Orthology	cellular component
apoptotic process	Orthology	biological process
cell cycle	Orthology	biological process
multicellular organism development	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
membrane	Orthology	cellular component
protein ubiquitination	Orthology	biological process
enzyme binding	Orthology	molecular function
negative regulation of Wnt signaling pathway	Orthology	biological process
midbody	Orthology	cellular component
protein homodimerization activity	Orthology	molecular function
cell projection	Orthology	cellular component
neuron projection	Orthology	cellular component
neuronal cell body	Orthology	cellular component
positive regulation of apoptotic process	Orthology	biological process
positive regulation of GTPase activity	Orthology	biological process
cell body	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
regulation of molecular function	Orthology	biological process
extracellular exosome	Orthology	cellular component
plasma membrane part	Orthology	cellular component
protein phosphorylation	Orthology	biological process
protein kinase binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
endopeptidase activity	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
molecular function regulator	Orthology	molecular function
transmembrane transport	Orthology	biological process
enzyme activator activity	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
enzyme regulator activity	Orthology	molecular function
protein kinase activity	Orthology	molecular function
cellular component organization	Orthology	biological process
cell migration	Orthology	biological process
proteolysis	Orthology	biological process
protein localization	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
protein transport	Orthology	biological process
establishment of protein localization to membrane	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cell adhesion molecule binding	Orthology	molecular function
cell division	Orthology	biological process
intracellular signal transduction	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
regulation of catalytic activity	Orthology	biological process
cell	Orthology	cellular component
cellular response to organic substance	Orthology	biological process
macromolecular complex	Orthology	cellular component
amide biosynthetic process	Orthology	biological process
cytoskeletal part	Blast	cellular component
microtubule cytoskeleton	Blast	cellular component
cytoplasmic part	Blast	cellular component
microtubule organizing center	Blast	cellular component
cell projection part	Blast	cellular component
plasma membrane region	Blast	cellular component

GO (Orthology)

71 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
phagocytic cup	Hs	cellular component
positive regulation of protein phosphorylation	Hs	biological process
RNA binding	Hs	molecular function
protein kinase C binding	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
plasma membrane	Hs	cellular component
translation	Hs	biological process
regulation of translation	Hs	biological process
apoptotic process	Hs	biological process
activation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
cell cycle	Hs	biological process
multicellular organism development	Hs	biological process
gastrulation	Hs	biological process
ion channel inhibitor activity	Hs	molecular function
cysteine-type endopeptidase activator activity involved in apoptotic process	Hs	molecular function
negative regulation of gene expression	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
viral process	Hs	biological process
protein ubiquitination	Hs	biological process
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
protein phosphatase binding	Hs	molecular function
negative regulation of Wnt signaling pathway	Hs	biological process
protein tyrosine kinase inhibitor activity	Hs	molecular function
negative regulation of cell growth	Hs	biological process
cyclin binding	Hs	molecular function
positive regulation of cell migration	Hs	biological process
dendrite	Hs	cellular component
midbody	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
receptor tyrosine kinase binding	Hs	molecular function
positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
regulation of protein localization	Hs	biological process
protein complex scaffold activity	Hs	molecular function
signaling adaptor activity	Hs	molecular function
regulation of growth	Hs	biological process
SH2 domain binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
cell projection	Hs	cellular component
positive regulation of Golgi to plasma membrane protein transport	Hs	biological process
neuron projection	Hs	cellular component
ribosome binding	Hs	molecular function
neuronal cell body	Hs	cellular component
positive regulation of apoptotic process	Hs	biological process
perikaryon	Hs	cellular component
pigmentation	Hs	biological process
positive regulation of GTPase activity	Hs	biological process
cell body	Hs	cellular component
cadherin binding	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
rhythmic process	Hs	biological process
regulation of cell division	Hs	biological process
regulation of cell cycle	Hs	biological process
negative regulation of protein kinase B signaling	Hs	biological process
negative regulation of protein tyrosine kinase activity	Hs	biological process
regulation of molecular function	Hs	biological process
extracellular exosome	Hs	cellular component
cellular response to glucose stimulus	Hs	biological process
rescue of stalled ribosome	Hs	biological process
IRE1-RACK1-PP2A complex	Hs	cellular component
regulation of establishment of cell polarity	Hs	biological process
positive regulation of ceramide biosynthetic process	Hs	biological process
positive regulation of gastrulation	Hs	biological process

GO (Blast)

43 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
spindle pole	Hs	cellular component	130	3.43e-34
phagocytic cup	Hs	cellular component	395	9.36e-139
RNA binding	Hs	molecular function	395	9.36e-139
protein kinase C binding	Hs	molecular function	395	9.36e-139
receptor binding	Hs	molecular function	395	9.36e-139
protein binding	Hs	molecular function	395	9.36e-139
nucleus	Hs	cellular component	395	9.36e-139
nucleoplasm	Hs	cellular component	395	9.36e-139
cytoplasm	Hs	cellular component	395	9.36e-139
mitochondrion	Hs	cellular component	395	9.36e-139
centrosome	Hs	cellular component	130	3.43e-34
centriole	Hs	cellular component	130	3.43e-34
cytosol	Hs	cellular component	395	9.36e-139
ribosome	Hs	cellular component	395	9.36e-139
cytoskeleton	Hs	cellular component	130	3.43e-34
plasma membrane	Hs	cellular component	395	9.36e-139
ion channel inhibitor activity	Hs	molecular function	395	9.36e-139
cysteine-type endopeptidase activator activity involved in apoptotic process	Hs	molecular function	395	9.36e-139
small ribosomal subunit	Hs	cellular component	395	9.36e-139
membrane	Hs	cellular component	395	9.36e-139
enzyme binding	Hs	molecular function	395	9.36e-139
protein phosphatase binding	Hs	molecular function	395	9.36e-139
protein tyrosine kinase inhibitor activity	Hs	molecular function	395	9.36e-139
cyclin binding	Hs	molecular function	395	9.36e-139
dendrite	Hs	cellular component	395	9.36e-139
midbody	Hs	cellular component	395	9.36e-139
intracellular ribonucleoprotein complex	Hs	cellular component	395	9.36e-139
receptor tyrosine kinase binding	Hs	molecular function	395	9.36e-139
protein complex scaffold activity	Hs	molecular function	395	9.36e-139
signaling adaptor activity	Hs	molecular function	395	9.36e-139
ciliary basal body	Hs	cellular component	130	3.43e-34
SH2 domain binding	Hs	molecular function	395	9.36e-139
protein homodimerization activity	Hs	molecular function	395	9.36e-139
cell projection	Hs	cellular component	395	9.36e-139
neuron projection	Hs	cellular component	395	9.36e-139
ribosome binding	Hs	molecular function	395	9.36e-139
neuronal cell body	Hs	cellular component	395	9.36e-139
perikaryon	Hs	cellular component	395	9.36e-139
cell body	Hs	cellular component	395	9.36e-139
cadherin binding	Hs	molecular function	395	9.36e-139
perinuclear region of cytoplasm	Hs	cellular component	395	9.36e-139
extracellular exosome	Hs	cellular component	395	9.36e-139
IRE1-RACK1-PP2A complex	Hs	cellular component	395	9.36e-139

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	2.9E-128