Aniseed - Gene card

Gene Card

Best human hits

SUCLA2; SUCLG2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000878

Gene Model ID

KH2012:KH.C1.622

Location

KhC1:7920660..7927792

Transcript Models and Sequences

KH2012:KH.C1.622.v1.A.nonSL10-1
KH2012:KH.C1.622.v1.A.nonSL11-1
KH2012:KH.C1.622.v1.A.nonSL12-1
KH2012:KH.C1.622.v1.A.nonSL14-1
KH2012:KH.C1.622.v1.A.nonSL15-1
KH2012:KH.C1.622.v1.A.nonSL2-1
KH2012:KH.C1.622.v1.A.nonSL4-1
KH2012:KH.C1.622.v1.A.nonSL5-1
KH2012:KH.C1.622.v1.A.nonSL6-1
KH2012:KH.C1.622.v1.A.nonSL7-1
KH2012:KH.C1.622.v1.A.nonSL8-1
KH2012:KH.C1.622.v1.A.nonSL9-1
KH2012:KH.C1.622.v1.A.SL13-1
KH2012:KH.C1.622.v1.A.SL2-1
KH2012:KH.C1.622.v1.A.SL3-1
KH2012:KH.C1.622.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007576
NCBI Reference Sequence	XM_002131540.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb4a6

Plate: R1CiGC29i03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
ATP-grasp_succ-CoA_synth-type	Pfam	ATP-grasp fold, succinyl-CoA synthetase-type
ATP-grasp	ProSiteProfiles	ATP-grasp fold
Succ_CoA_synthase_bsu	TIGRFAM	Succinate--CoA synthetase, beta subunit
Succ-CoA_synthase_bsu_CS	ProSitePatterns	Succinyl-CoA synthetase, beta subunit, conserved site
Succ_CoA_betaA_euk	Hamap	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Succ_CoA_synthase_bsu	PANTHER	Succinate--CoA synthetase, beta subunit
Succinyl-CoA_synth-like	Gene3D	Succinyl-CoA synthetase-like
Succ_CoA_synthase_bsu	Hamap	Succinate--CoA synthetase, beta subunit
Succ_CoA_synthase_bsu	PIRSF	Succinate--CoA synthetase, beta subunit
ATP_grasp_subdomain_1	Gene3D	ATP-grasp fold, subdomain 1
CoA_ligase	Pfam	ATP-citrate lyase/succinyl-CoA ligase
Succinyl-CoA_synth-like	SUPERFAMILY	Succinyl-CoA synthetase-like

GOSlim

24 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
magnesium ion binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
GTP binding	Blast	molecular function
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
plasma membrane	Blast	cellular component
metabolic process	Orthology	biological process
ligase activity	Orthology	molecular function
myelin sheath	Orthology	cellular component
metal ion binding	Orthology	molecular function
protein heterodimerization activity	Blast	molecular function
extracellular exosome	Orthology	cellular component
oxidation-reduction process	Orthology	biological process
cellular metabolic process	Orthology	biological process
phosphate-containing compound metabolic process	Orthology	biological process
nucleobase-containing compound metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
anion binding	Blast	molecular function
guanyl ribonucleotide binding	Blast	molecular function
purine ribonucleoside binding	Blast	molecular function
macromolecular complex	Blast	cellular component

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
magnesium ion binding	Hs	molecular function
catalytic activity	Hs	molecular function
succinate-CoA ligase (ADP-forming) activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
tricarboxylic acid cycle	Hs	biological process
succinyl-CoA metabolic process	Hs	biological process
succinate metabolic process	Hs	biological process
metabolic process	Hs	biological process
ligase activity	Hs	molecular function
myelin sheath	Hs	cellular component
metal ion binding	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	610	0.0
magnesium ion binding	Hs	molecular function	610	0.0
catalytic activity	Hs	molecular function	610	0.0
succinate-CoA ligase (ADP-forming) activity	Hs	molecular function	610	0.0
succinate-CoA ligase (GDP-forming) activity	Hs	molecular function	374	1.21e-126
protein binding	Hs	molecular function	610	0.0
ATP binding	Hs	molecular function	610	0.0
GTP binding	Hs	molecular function	374	1.21e-126
mitochondrion	Hs	cellular component	610	0.0
mitochondrial matrix	Hs	cellular component	610	0.0
plasma membrane	Hs	cellular component	374	1.21e-126
ligase activity	Hs	molecular function	610	0.0
GDP binding	Hs	molecular function	374	1.21e-126
myelin sheath	Hs	cellular component	610	0.0
succinate-CoA ligase complex (GDP-forming)	Hs	cellular component	374	1.21e-126
metal ion binding	Hs	molecular function	610	0.0
protein heterodimerization activity	Hs	molecular function	374	1.21e-126
extracellular exosome	Hs	cellular component	610	0.0

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
catalytic activity	Pfam	molecular function	8.3E-26
ATP binding	Gene3D	molecular function	2.4E-91
mitochondrion	Hamap	cellular component	59.548
tricarboxylic acid cycle	PANTHER	biological process	6.4E-204
metabolic process	Pfam	biological process	8.3E-26
metal ion binding	ProSiteProfiles	molecular function	9.394