Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000018982
NCBI Reference Sequence	NM_001128896.1
NCBI Reference Sequence	XR_001975099.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb093d12

Plate: R1CiGC46d02

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type

GOSlim

44 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
spermatogenesis	Orthology	biological process
zinc ion binding	Orthology	molecular function
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
transcription regulatory region sequence-specific DNA binding	Orthology	molecular function
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
DNA metabolic process	Orthology	biological process
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
multicellular organism development	Orthology	biological process
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
nuclear part	Orthology	cellular component
enzyme binding	Orthology	molecular function
anatomical structure morphogenesis	Orthology	biological process
organelle organization	Orthology	biological process

GO (Orthology)

54 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
four-way junction DNA binding	Hs	molecular function
double-strand break repair via homologous recombination	Hs	biological process
nuclear chromatin	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
enhancer sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription coactivator activity	Hs	molecular function
transcription corepressor activity	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
cytoplasm	Hs	cellular component
DNA repair	Hs	biological process
DNA recombination	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
RNA localization	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
spermatogenesis	Hs	biological process
zinc ion binding	Hs	molecular function
male gonad development	Hs	biological process
female gonad development	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
response to UV-C	Hs	biological process
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
nuclear matrix	Hs	cellular component
protein deubiquitination	Hs	biological process
cell differentiation	Hs	biological process
Ino80 complex	Hs	cellular component
PcG protein complex	Hs	cellular component
cellular response to UV	Hs	biological process
histone deacetylase binding	Hs	molecular function
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
SMAD binding	Hs	molecular function
metal ion binding	Hs	molecular function
camera-type eye morphogenesis	Hs	biological process
chromosome organization	Hs	biological process
meiotic cell cycle	Hs	biological process
cellular response to interleukin-1	Hs	biological process
negative regulation of pri-miRNA transcription from RNA polymerase II promoter	Hs	biological process

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
four-way junction DNA binding	Hs	molecular function	300	6.06e-100
nuclear chromatin	Hs	cellular component	300	6.06e-100
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
core promoter proximal region sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	300	6.06e-100
enhancer sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	270	9.46e-89
nucleic acid binding	Hs	molecular function	300	6.06e-100
DNA binding	Hs	molecular function	300	6.06e-100
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
transcription coactivator activity	Hs	molecular function	300	6.06e-100
transcription corepressor activity	Hs	molecular function	300	6.06e-100
RNA binding	Hs	molecular function	300	6.06e-100
protein binding	Hs	molecular function	300	6.06e-100
nucleus	Hs	cellular component	300	6.06e-100
nucleoplasm	Hs	cellular component	300	6.06e-100
transcription factor complex	Hs	cellular component	300	6.06e-100
cytoplasm	Hs	cellular component	300	6.06e-100
zinc ion binding	Hs	molecular function	300	6.06e-100
nuclear matrix	Hs	cellular component	300	6.06e-100
Ino80 complex	Hs	cellular component	300	6.06e-100
PcG protein complex	Hs	cellular component	300	6.06e-100
histone deacetylase binding	Hs	molecular function	300	6.06e-100
sequence-specific DNA binding	Hs	molecular function	300	6.06e-100
transcription regulatory region DNA binding	Hs	molecular function	300	6.06e-100
SMAD binding	Hs	molecular function	300	6.06e-100
metal ion binding	Hs	molecular function	300	6.06e-100

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	8.4E-4

Gene Card

Best human hits

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Unique Gene ID

Gene Model ID

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Transcript Models and Sequences