Aniseed - Gene card

Gene 'KH2012:KH.C1.372'

Gene Card

Best human hits

SELL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000606

Gene Model ID

KH2012:KH.C1.372

Location

KhC1:5296183..5297755

Transcript Models and Sequences

KH2012:KH.C1.372.v1.A.SL2-1
KH2012:KH.C1.372.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004297

Collections

Gene collection 1 (N. Satoh)

1 result

cibd080e09

Plate: R1CiGC39a03

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
C-type_lectin-like	Pfam	C-type lectin-like
CTDL_fold	SUPERFAMILY	C-type lectin fold
C-type_lectin-like/link_sf	Gene3D	C-type lectin-like/link domain superfamily
C-type_lectin-like	SMART	C-type lectin-like
C-type_lectin-like	ProSiteProfiles	C-type lectin-like

GOSlim

19 results

GO Term	Annotation Origin	Type
calcium ion binding	Blast	molecular function
protein binding	Blast	molecular function
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
cell surface	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
metal ion binding	Blast	molecular function
cell adhesion molecule binding	Blast	molecular function
enzyme binding	Blast	molecular function
anion binding	Blast	molecular function
carbohydrate derivative binding	Blast	molecular function
plasma membrane part	Blast	cellular component
binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
whole membrane	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
bounding membrane of organelle	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protease binding	Hs	molecular function	48.5	2.14e-06
calcium ion binding	Hs	molecular function	48.5	2.14e-06
protein binding	Hs	molecular function	48.5	2.14e-06
plasma membrane	Hs	cellular component	48.5	2.14e-06
integral component of plasma membrane	Hs	cellular component	48.5	2.14e-06
heparin binding	Hs	molecular function	48.5	2.14e-06
external side of plasma membrane	Hs	cellular component	48.5	2.14e-06
cell surface	Hs	cellular component	48.5	2.14e-06
membrane	Hs	cellular component	48.5	2.14e-06
integral component of membrane	Hs	cellular component	48.5	2.14e-06
carbohydrate binding	Hs	molecular function	48.5	2.14e-06
secretory granule membrane	Hs	cellular component	48.5	2.14e-06
glycosphingolipid binding	Hs	molecular function	48.5	2.14e-06
metal ion binding	Hs	molecular function	48.5	2.14e-06
cell adhesion molecule binding	Hs	molecular function	48.5	2.14e-06
oligosaccharide binding	Hs	molecular function	48.5	2.14e-06

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value