Login
Help

GENE CARD

Submit your Data

  1. Gene 'KH2012:KH.C1.359'

Gene Card

Best human hits

ZFX; ZFY; ZNF836

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000591

Gene Model ID

KH2012:KH.C1.359

Location

KhC1:916399..922781

Transcript Models and Sequences

  KH2012:KH.C1.359.v1.A.nonSL2-1
KH2012:KH.C1.359.v1.A.nonSL4-1
KH2012:KH.C1.359.v1.A.nonSL5-1
KH2012:KH.C1.359.v1.A.SL1-1
KH2012:KH.C1.359.v1.A.SL3-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000012505
NCBI Reference Sequence NM_001128903.1
NCBI Reference Sequence XM_018817441.1
NCBI Reference Sequence XM_018817496.1
Collections

Gateway full ORF

2 results

cien101014

Plate: VES86_F02

cien210067

Plate: VES102_F22

Gene collection 1 (N. Satoh)

3 results

cieg019n12

Plate: R1CiGC18j05

cilv041o20

Plate: R1CiGC28o10

citb048o22

Plate: R1CiGC45b24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

11 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
metal ion binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 125 9.64e-30
nucleic acid binding Hs molecular function 125 9.64e-30
DNA binding Hs molecular function 125 9.64e-30
transcription factor activity, sequence-specific DNA binding Hs molecular function 110 6.37e-25
transcription coactivator activity Hs molecular function 125 9.64e-30
protein binding Hs molecular function 123 4.16e-29
intracellular Hs cellular component 110 6.37e-25
nucleus Hs cellular component 125 9.64e-30
nucleoplasm Hs cellular component 125 9.64e-30
nucleolus Hs cellular component 125 9.64e-30
metal ion binding Hs molecular function 125 9.64e-30

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 0.006

Back to Top