Gene Card
Best human hits
NAA38; SNRPB; SNRPN
Unique Gene ID
Cirobu.g00000584
Gene Model ID
KH2012:KH.C1.352
Location
KhC1:910294..911892
Transcript Models and Sequences
External database links
1 result
| Database | Gene ID |
|---|---|
| NCBI Reference Sequence | XM_002129535.4 |
Gateway full ORF
2 results
cien88205
Plate: VES84_H04
cien182880
Plate: VES98_K12
Gene collection 1 (N. Satoh)
1 result
cieg003j07
Plate: R1CiGC15l04
n/a
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Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| LSMD1 | PANTHER | LSM domain containing 1 |
| LSM_dom_euk/arc | SMART | LSM domain, eukaryotic/archaea-type |
| LSM_dom_euk/arc | Pfam | LSM domain, eukaryotic/archaea-type |
| LSMD1 | CDD | LSM domain containing 1 |
| LSM_dom_sf | SUPERFAMILY | LSM domain superfamily |
GOSlim
11 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Blast | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Blast | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Blast | cellular component |
| negative regulation of apoptotic process | Orthology | biological process |
| extracellular exosome | Blast | cellular component |
| macromolecular complex | Orthology | cellular component |
| cytoplasmic part | Orthology | cellular component |
| nuclear part | Blast | cellular component |
GO (Orthology)
6 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| polysome | Hs | cellular component |
| NatC complex | Hs | cellular component |
| negative regulation of apoptotic process | Hs | biological process |
GO (Blast)
29 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA binding | Hs | molecular function | 43.1 | 3.93e-06 |
| protein binding | Hs | molecular function | 91.3 | 6.56e-25 |
| nucleus | Hs | cellular component | 91.3 | 6.56e-25 |
| nucleoplasm | Hs | cellular component | 43.1 | 3.93e-06 |
| spliceosomal complex | Hs | cellular component | 43.1 | 3.93e-06 |
| U5 snRNP | Hs | cellular component | 43.1 | 3.93e-06 |
| U7 snRNP | Hs | cellular component | 43.1 | 3.93e-06 |
| U1 snRNP | Hs | cellular component | 43.1 | 3.93e-06 |
| U2 snRNP | Hs | cellular component | 43.1 | 3.93e-06 |
| U4 snRNP | Hs | cellular component | 43.1 | 3.93e-06 |
| U12-type spliceosomal complex | Hs | cellular component | 43.1 | 3.93e-06 |
| telomerase holoenzyme complex | Hs | cellular component | 43.1 | 3.93e-06 |
| cytoplasm | Hs | cellular component | 91.3 | 6.56e-25 |
| cytosol | Hs | cellular component | 43.1 | 3.93e-06 |
| polysome | Hs | cellular component | 91.3 | 6.56e-25 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 43.1 | 3.93e-06 |
| small nuclear ribonucleoprotein complex | Hs | cellular component | 43.1 | 3.93e-06 |
| U2 snRNA binding | Hs | molecular function | 43.1 | 3.93e-06 |
| NatC complex | Hs | cellular component | 91.3 | 6.56e-25 |
| methylosome | Hs | cellular component | 43.1 | 3.93e-06 |
| SMN-Sm protein complex | Hs | cellular component | 43.1 | 3.93e-06 |
| U4/U6 x U5 tri-snRNP complex | Hs | cellular component | 43.1 | 3.93e-06 |
| telomerase RNA binding | Hs | molecular function | 43.1 | 3.93e-06 |
| extracellular exosome | Hs | cellular component | 43.1 | 3.93e-06 |
| U2-type prespliceosome | Hs | cellular component | 43.1 | 3.93e-06 |
| U2-type catalytic step 2 spliceosome | Hs | cellular component | 43.1 | 3.93e-06 |
| catalytic step 2 spliceosome | Hs | cellular component | 43.1 | 3.93e-06 |
| histone pre-mRNA 3'end processing complex | Hs | cellular component | 43.1 | 3.93e-06 |
| histone pre-mRNA DCP binding | Hs | molecular function | 43.1 | 3.93e-06 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| NatC complex | PANTHER | cellular component | 2.4E-35 |
