Aniseed - Gene card

Gene Card

Best human hits

YBX1; YBX2; YBX3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000486

Gene Model ID

KH2012:KH.C1.264

Location

KhC1:3320097..3326393

Transcript Models and Sequences

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000010654
NCBI Reference Sequence	NM_001078542.1
NCBI Reference Sequence	XM_009863809.2
NCBI Reference Sequence	XM_009863810.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad010l01

Plate: R1CiGC02e11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
CSP_DNA-bd	PRINTS	Cold-shock protein, DNA-binding
CSD	SMART	Cold shock domain
CSP_DNA-bd	CDD	Cold-shock protein, DNA-binding
CSP_DNA-bd	Pfam	Cold-shock protein, DNA-binding

GOSlim

48 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
mRNA processing	Orthology	biological process
Notch signaling pathway	Orthology	biological process
spermatogenesis	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear membrane	Orthology	cellular component
negative regulation of apoptotic process	Orthology	biological process
intracellular membrane-bounded organelle	Orthology	cellular component
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
perinuclear region of cytoplasm	Orthology	cellular component
extracellular exosome	Orthology	cellular component
nucleolus	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell junction	Orthology	cellular component
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
response to stress	Orthology	biological process
sexual reproduction	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
enzyme binding	Orthology	molecular function
developmental process	Orthology	biological process
cell development	Orthology	biological process
gamete generation	Orthology	biological process
cell division	Orthology	biological process
mRNA catabolic process	Orthology	biological process
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

54 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
fibrillar center	Hs	cellular component
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription corepressor activity	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
polysome	Hs	cellular component
bicellular tight junction	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
mRNA processing	Hs	biological process
Notch signaling pathway	Hs	biological process
spermatogenesis	Hs	biological process
RNA splicing	Hs	biological process
male gonad development	Hs	biological process
response to cold	Hs	biological process
fertilization	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
Rho GTPase binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
nuclear membrane	Hs	cellular component
negative regulation of apoptotic process	Hs	biological process
intracellular membrane-bounded organelle	Hs	cellular component
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of organ growth	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
oocyte development	Hs	biological process
GTPase binding	Hs	molecular function
positive regulation of cell division	Hs	biological process
extracellular exosome	Hs	cellular component
3'-UTR-mediated mRNA stabilization	Hs	biological process
CRD-mediated mRNA stability complex	Hs	cellular component
histone pre-mRNA 3'end processing complex	Hs	cellular component
cellular response to tumor necrosis factor	Hs	biological process
positive regulation of cytoplasmic translation	Hs	biological process

GO (Blast)

34 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	155	1.85e-44
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	110	8.21e-28
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	155	1.85e-44
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	110	8.21e-28
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	155	1.85e-44
fibrillar center	Hs	cellular component	155	2.47e-44
nucleic acid binding	Hs	molecular function	155	1.85e-44
DNA binding	Hs	molecular function	155	1.85e-44
chromatin binding	Hs	molecular function	110	8.21e-28
double-stranded DNA binding	Hs	molecular function	155	1.85e-44
single-stranded DNA binding	Hs	molecular function	155	1.85e-44
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	155	1.85e-44
transcription corepressor activity	Hs	molecular function	155	1.85e-44
RNA binding	Hs	molecular function	155	1.85e-44
mRNA 3'-UTR binding	Hs	molecular function	155	1.85e-44
protein binding	Hs	molecular function	155	1.85e-44
extracellular region	Hs	cellular component	110	8.21e-28
nucleus	Hs	cellular component	155	1.85e-44
nucleoplasm	Hs	cellular component	110	8.21e-28
U12-type spliceosomal complex	Hs	cellular component	110	8.21e-28
cytoplasm	Hs	cellular component	155	1.85e-44
cytosol	Hs	cellular component	155	1.85e-44
polysome	Hs	cellular component	155	1.85e-44
bicellular tight junction	Hs	cellular component	155	1.85e-44
cytoplasmic stress granule	Hs	cellular component	110	8.21e-28
Rho GTPase binding	Hs	molecular function	155	1.85e-44
intracellular ribonucleoprotein complex	Hs	cellular component	155	1.85e-44
nuclear membrane	Hs	cellular component	110	8.21e-28
intracellular membrane-bounded organelle	Hs	cellular component	110	8.21e-28
perinuclear region of cytoplasm	Hs	cellular component	155	1.85e-44
GTPase binding	Hs	molecular function	110	8.21e-28
extracellular exosome	Hs	cellular component	110	8.21e-28
CRD-mediated mRNA stability complex	Hs	cellular component	110	8.21e-28
histone pre-mRNA 3'end processing complex	Hs	cellular component	110	8.21e-28

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	1.9E-19
DNA binding	Pfam	molecular function	5.4E-23
regulation of transcription, DNA-templated	Pfam	biological process	5.4E-23