Aniseed - Gene card

Gene 'KH2012:KH.C1.241'

Gene Card

Best human hits

VPS53

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000461

Gene Model ID

KH2012:KH.C1.241

Location

KhC1:7444037..7447735

Transcript Models and Sequences

KH2012:KH.C1.241.v1.A.nonSL3-1
KH2012:KH.C1.241.v1.A.SL2-1
KH2012:KH.C1.241.v2.A.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004677
NCBI Reference Sequence	XM_009864153.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl015o20

Plate: R1CiGC10c14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Vps53_N	Pfam	Vps53-like, N-terminal

GOSlim

15 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
endosome	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
protein transport	Orthology	biological process
membrane	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
Golgi apparatus part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
intracellular transport	Orthology	biological process
Golgi membrane	Orthology	cellular component

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
GARP complex	Hs	cellular component
protein binding	Hs	molecular function
endosome	Hs	cellular component
Golgi apparatus	Hs	cellular component
trans-Golgi network	Hs	cellular component
cytosol	Hs	cellular component
lysosomal transport	Hs	biological process
endosome membrane	Hs	cellular component
protein transport	Hs	biological process
membrane	Hs	cellular component
endocytic recycling	Hs	biological process
trans-Golgi network membrane	Hs	cellular component
retrograde transport, endosome to Golgi	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
recycling endosome	Hs	cellular component
EARP complex	Hs	cellular component

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
GARP complex	Hs	cellular component	973
protein binding	Hs	molecular function	973
endosome	Hs	cellular component	973
Golgi apparatus	Hs	cellular component	973
trans-Golgi network	Hs	cellular component	973
cytosol	Hs	cellular component	973
endosome membrane	Hs	cellular component	973
membrane	Hs	cellular component	973
trans-Golgi network membrane	Hs	cellular component	973
perinuclear region of cytoplasm	Hs	cellular component	973
recycling endosome	Hs	cellular component	973
EARP complex	Hs	cellular component	973

GO (InterProScan)