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GENE CARD

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  1. Gene 'KH2012:KH.C1.17'

Gene Card

Best human hits

PABPC1; PABPC1L; TRNAU1AP

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000381

Gene Model ID

KH2012:KH.C1.17

Location

KhC1:3215468..3221174

Transcript Models and Sequences

  KH2012:KH.C1.17.v1.A.SL1-1
KH2012:KH.C1.17.v2.A.ND2-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000018237
NCBI Reference Sequence XM_009863902.2
NCBI Reference Sequence XM_018812143.1
NCBI Reference Sequence XM_018812146.1
NCBI Reference Sequence XM_018812151.1
Collections

Gateway full ORF

2 results

cien78085

Plate: VES82_N13

cien213981

Plate: VES103_N12

Gene collection 1 (N. Satoh)

1 result

cicl025d17

Plate: R1CiGC11f21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom SMART RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
SECp43_RRM2 CDD SECp43, RNA recognition motif 2
RRM_dom Pfam RNA recognition motif domain

GOSlim

16 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Blast molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
focal adhesion Blast cellular component
protein C-terminus binding Blast molecular function
membrane Blast cellular component
extracellular exosome Blast cellular component
regulation of gene expression Orthology biological process
nuclear part Blast cellular component
macromolecular complex Blast cellular component
positive regulation of gene expression Blast biological process
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
selenocysteine incorporation Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
translation Hs biological process

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 223 1.29e-71
RNA binding Hs molecular function 223 1.29e-71
mRNA 3'-UTR binding Hs molecular function 72.4 6.32e-14
protein binding Hs molecular function 72.4 6.32e-14
nucleus Hs cellular component 223 1.29e-71
spliceosomal complex Hs cellular component 72.4 6.32e-14
cytoplasm Hs cellular component 223 1.29e-71
cytosol Hs cellular component 72.4 6.32e-14
focal adhesion Hs cellular component 72.4 6.32e-14
protein C-terminus binding Hs molecular function 72.4 6.32e-14
poly(A) binding Hs molecular function 72.4 6.32e-14
poly(U) RNA binding Hs molecular function 72.4 6.32e-14
translation activator activity Hs molecular function 72.4 6.32e-14
cytoplasmic stress granule Hs cellular component 72.4 6.32e-14
membrane Hs cellular component 72.4 6.32e-14
intracellular ribonucleoprotein complex Hs cellular component 72.4 6.32e-14
cytoplasmic ribonucleoprotein granule Hs cellular component 72.4 6.32e-14
extracellular exosome Hs cellular component 72.4 6.32e-14
catalytic step 2 spliceosome Hs cellular component 72.4 6.32e-14

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 4.93E-33

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