Aniseed - Gene card

EST 'BW211821' >
Gene 'KH2012:KH.C1.115'

Gene Card

Best human hits

RPS29

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000168

Gene Model ID

KH2012:KH.C1.115

Location

KhC1:2974377..2975444

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000010675

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cits050j03

Plate: R1CiGC36e09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Ribosomal_S14	Pfam	Ribosomal protein S14

GOSlim

19 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
zinc ion binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
zinc ion binding	Hs	molecular function
small ribosomal subunit	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
polysomal ribosome	Hs	cellular component
metal ion binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	87.0	5.27e-25
structural constituent of ribosome	Hs	molecular function	87.0	5.27e-25
intracellular	Hs	cellular component	87.0	5.27e-25
nucleoplasm	Hs	cellular component	87.0	5.27e-25
cytoplasm	Hs	cellular component	87.0	5.27e-25
endoplasmic reticulum	Hs	cellular component	87.0	5.27e-25
rough endoplasmic reticulum	Hs	cellular component	87.0	5.27e-25
cytosol	Hs	cellular component	87.0	5.27e-25
ribosome	Hs	cellular component	87.0	5.27e-25
focal adhesion	Hs	cellular component	87.0	5.27e-25
zinc ion binding	Hs	molecular function	87.0	5.27e-25
small ribosomal subunit	Hs	cellular component	87.0	5.27e-25
cytosolic small ribosomal subunit	Hs	cellular component	87.0	5.27e-25
intracellular ribonucleoprotein complex	Hs	cellular component	87.0	5.27e-25
polysomal ribosome	Hs	cellular component	87.0	5.27e-25
metal ion binding	Hs	molecular function	87.0	5.27e-25
extracellular exosome	Hs	cellular component	87.0	5.27e-25
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component	87.0	5.27e-25

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	Pfam	molecular function	2.4E-17
intracellular	Pfam	cellular component	2.4E-17
ribosome	Pfam	cellular component	2.4E-17
translation	Pfam	biological process	2.4E-17