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GENE CARD

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Gene Card

Best human hits

HAND1; HAND2; SCX

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000132

Gene Model ID

KH2012:KH.C1.1116

Location

KhC1:7464419..7466215

Transcript Models and Sequences

  KH2012:KH.C1.1116.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006582
NCBI Reference Sequence NM_001078310.1
Collections

Gateway full ORF

1 result

cien181907

Plate: VES98_P06

Gene collection 1 (N. Satoh)

1 result

citb018l16

Plate: R1CiGC31k05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

25 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
transcription corepressor activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
transcription factor binding Blast molecular function
enzyme binding Blast molecular function
macromolecular complex Blast cellular component
identical protein binding Blast molecular function
protein homodimerization activity Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
protein heterodimerization activity Blast molecular function
protein dimerization activity Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
sequence-specific double-stranded DNA binding Blast molecular function
intracellular part Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 64.3 3.32e-12
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 64.3 3.32e-12
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 63.2 8.95e-12
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 59.3 1.94e-10
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 64.3 3.32e-12
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 64.3 3.32e-12
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 63.2 8.95e-12
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 59.3 1.94e-10
DNA binding Hs molecular function 64.3 3.32e-12
AT DNA binding Hs molecular function 64.3 3.32e-12
transcription coactivator activity Hs molecular function 64.3 3.32e-12
transcription corepressor activity Hs molecular function 63.2 8.95e-12
protein binding Hs molecular function 64.3 3.32e-12
nucleus Hs cellular component 64.3 3.32e-12
nucleoplasm Hs cellular component 63.2 8.95e-12
transcription factor complex Hs cellular component 64.3 3.32e-12
nucleolus Hs cellular component 63.2 8.95e-12
cytoplasm Hs cellular component 63.2 8.95e-12
transcription factor binding Hs molecular function 64.3 3.32e-12
enzyme binding Hs molecular function 63.2 8.95e-12
macromolecular complex Hs cellular component 64.3 3.32e-12
activating transcription factor binding Hs molecular function 64.3 3.32e-12
identical protein binding Hs molecular function 63.2 8.95e-12
protein homodimerization activity Hs molecular function 64.3 3.32e-12
bHLH transcription factor binding Hs molecular function 63.2 8.95e-12
sequence-specific DNA binding Hs molecular function 64.3 3.32e-12
transcription regulatory region DNA binding Hs molecular function 64.3 3.32e-12
protein heterodimerization activity Hs molecular function 64.3 3.32e-12
protein dimerization activity Hs molecular function 64.3 3.32e-12
E-box binding Hs molecular function 64.3 3.32e-12
RNA polymerase II transcription factor complex Hs cellular component 63.2 8.95e-12

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein dimerization activity Gene3D molecular function 3.6E-19

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