Aniseed - Gene card

Gene 'KH2012:KH.C1.111'

Gene Card

Best human hits

AGAP1; AGAP3; AGAP4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000125

Gene Model ID

KH2012:KH.C1.111

Location

KhC1:7213047..7225993

Transcript Models and Sequences

KH2012:KH.C1.111.v1.A.SL1-1
KH2012:KH.C1.111.v2.A.SL1-2
KH2012:KH.C1.111.v3.A.SL3-2
KH2012:KH.C1.111.v4.R.ND2-2
KH2012:KH.C1.111.v5.A.SL3-2

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002127406.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad013o15

Plate: R1CiGC02m16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

19 results

IPR Term	Analysis	Definition
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Small_GTPase_Ras	ProSiteProfiles	Small GTPase superfamily, Ras type
Ankyrin_rpt-contain_dom	ProSiteProfiles	Ankyrin repeat-containing domain
Ankyrin_rpt-contain_sf	Gene3D	Ankyrin repeat-containing domain superfamily
Ankyrin_rpt-contain_sf	SUPERFAMILY	Ankyrin repeat-containing domain superfamily
ArfGAP_dom_sf	Gene3D	ArfGAP domain superfamily
Ankyrin_rpt-contain_dom	CDD	Ankyrin repeat-containing domain
PH-like_dom_sf	Gene3D	PH-like domain superfamily
ArfGAP_dom	PRINTS	Arf GTPase activating protein
ArfGAP_dom	ProSiteProfiles	Arf GTPase activating protein
ARFGAP/RecO	SUPERFAMILY	ARFGAP/RecO-like zinc finger
PH_domain	ProSiteProfiles	Pleckstrin homology domain
PH_domain	SMART	Pleckstrin homology domain
ArfGAP_dom	Pfam	Arf GTPase activating protein
PH_domain	Pfam	Pleckstrin homology domain
Ankyrin_rpt	ProSiteProfiles	Ankyrin repeat
ArfGAP_dom	SMART	Arf GTPase activating protein
Small_GTPase	Pfam	Small GTPase superfamily
Ankyrin_rpt	Pfam	Ankyrin repeat

GOSlim

27 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
GTPase activity	Orthology	molecular function
GTPase activator activity	Orthology	molecular function
protein binding	Orthology	molecular function
GTP binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
signal transduction	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
positive regulation of GTPase activity	Orthology	biological process
metal ion binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
mitochondrion	Orthology	cellular component
protein kinase binding	Orthology	molecular function
negative regulation of apoptotic process	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
extracellular exosome	Orthology	cellular component
anion binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
enzyme activator activity	Orthology	molecular function
protein kinase activity	Orthology	molecular function
positive regulation of catalytic activity	Orthology	biological process
protein metabolic process	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
GTPase activity	Hs	molecular function
GTPase activator activity	Hs	molecular function
protein binding	Hs	molecular function
GTP binding	Hs	molecular function
phospholipid binding	Hs	molecular function
cytoplasm	Hs	cellular component
signal transduction	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
positive regulation of GTPase activity	Hs	biological process
metal ion binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
mitochondrion	Hs	cellular component
positive regulation of phosphatidylinositol 3-kinase signaling	Hs	biological process
protein kinase binding	Hs	molecular function
protein kinase activator activity	Hs	molecular function
activation of protein kinase activity	Hs	biological process
negative regulation of protein catabolic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of JAK-STAT cascade	Hs	biological process
extracellular exosome	Hs	cellular component
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	485	2.88e-160
GTPase activity	Hs	molecular function	485	2.88e-160
GTPase activator activity	Hs	molecular function	485	2.88e-160
protein binding	Hs	molecular function	485	2.88e-160
GTP binding	Hs	molecular function	485	2.88e-160
phospholipid binding	Hs	molecular function	403	2.94e-127
cytoplasm	Hs	cellular component	485	2.88e-160
membrane	Hs	cellular component	485	2.88e-160
metal ion binding	Hs	molecular function	485	2.88e-160

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
GTPase activity	Pfam	molecular function	4.4E-16
GTPase activator activity	SMART	molecular function	2.3E-45
protein binding	Pfam	molecular function	0.015
GTP binding	Pfam	molecular function	4.4E-16
signal transduction	ProSiteProfiles	biological process	11.791
membrane	ProSiteProfiles	cellular component	11.791