Aniseed - Gene card

Gene 'KH2012:KH.C1.1086'

Gene Card

Best human hits

TDRD1; TDRD15; TDRD6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000098

Gene Model ID

KH2012:KH.C1.1086

Location

KhC1:5105027..5108555

Transcript Models and Sequences

KH2012:KH.C1.1086.v1.A.SL2-1
KH2012:KH.C1.1086.v1.R.ND1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cien213330

Plate: VES103_G09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Tudor	ProSiteProfiles	Tudor domain
SNase_OB-fold_sf	Gene3D	SNase-like, OB-fold superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
Znf_MYND	Pfam	Zinc finger, MYND-type
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
Tudor	Pfam	Tudor domain
Tudor	SMART	Tudor domain
Znf_MYND	ProSiteProfiles	Zinc finger, MYND-type

GOSlim

16 results

GO Term	Annotation Origin	Type
cytoplasm	Orthology	cellular component
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
metal ion binding	Orthology	molecular function
nucleic acid binding	InterProScan	molecular function
gamete generation	Orthology	biological process
cell development	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA metabolic process	Orthology	biological process
DNA metabolic process	Orthology	biological process
reproductive process	Orthology	biological process

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
cytoplasm	Hs	cellular component
multicellular organism development	Hs	biological process
germ cell development	Hs	biological process
spermatogenesis	Hs	biological process
cell differentiation	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
chromatoid body	Hs	cellular component
piRNA metabolic process	Hs	biological process
DNA methylation involved in gamete generation	Hs	biological process
P granule	Hs	cellular component
metal ion binding	Hs	molecular function
meiotic cell cycle	Hs	biological process
pi-body	Hs	cellular component

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
cytoplasm	Hs	cellular component	169	7.34e-43
intracellular ribonucleoprotein complex	Hs	cellular component	169	7.34e-43
chromatoid body	Hs	cellular component	169	7.34e-43
P granule	Hs	cellular component	169	7.34e-43
metal ion binding	Hs	molecular function	169	7.34e-43
pi-body	Hs	cellular component	169	7.34e-43

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.33E-19