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GENE CARD

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  1. Gene 'KH2012:KH.C1.108'

Gene Card

Best human hits

SS18; SS18L1; SS18L2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000091

Gene Model ID

KH2012:KH.C1.108

Location

KhC1:2118538..2119754

Transcript Models and Sequences

  KH2012:KH.C1.108.v1.A.SL1-1
KH2012:KH.C1.108.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000023992
Collections

Gateway full ORF

2 results

cien118374

Plate: VES88_P19

cien170679

Plate: VES96_H17

Gene collection 1 (N. Satoh)

1 result

cigd038p21

Plate: R1CiGC41h09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
SS18_fam Pfam SS18 family

GOSlim

26 results

GO Term Annotation Origin Type
cell morphogenesis Orthology biological process
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
nuclear body Orthology cellular component
intracellular signal transduction Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
regulation of nucleic acid-templated transcription Orthology biological process
microtubule-based process Orthology biological process
organelle organization Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
nuclear lumen Orthology cellular component
cytoplasmic part Orthology cellular component
microtubule Orthology cellular component
neuron projection development Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cell morphogenesis involved in neuron differentiation Orthology biological process
neuron projection morphogenesis Orthology biological process
neuron part Orthology cellular component
developmental process Orthology biological process

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
microtubule cytoskeleton organization Hs biological process
chromosome, centromeric region Hs cellular component
kinetochore Hs cellular component
condensed chromosome kinetochore Hs cellular component
condensed nuclear chromosome, centromeric region Hs cellular component
cell morphogenesis Hs biological process
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
chromosome Hs cellular component
cytosol Hs cellular component
cytoplasmic microtubule Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
cytoskeleton organization Hs biological process
dendrite development Hs biological process
nuclear body Hs cellular component
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function
intracellular signal transduction Hs biological process
response to drug Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
ephrin receptor signaling pathway Hs biological process
regulation of dendrite development Hs biological process
positive regulation of dendrite morphogenesis Hs biological process
npBAF complex Hs cellular component
nBAF complex Hs cellular component
neuronal stem cell population maintenance Hs biological process
regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromosome, centromeric region Hs cellular component 96.3 4.51e-23
kinetochore Hs cellular component 96.3 4.51e-23
condensed chromosome kinetochore Hs cellular component 96.3 4.51e-23
condensed nuclear chromosome, centromeric region Hs cellular component 96.3 4.51e-23
transcription coactivator activity Hs molecular function 96.3 4.51e-23
protein binding Hs molecular function 96.3 4.51e-23
nucleus Hs cellular component 96.3 4.51e-23
chromosome Hs cellular component 96.3 4.51e-23
cytosol Hs cellular component 96.3 4.51e-23
cytoplasmic microtubule Hs cellular component 89.4 1.63e-20
nuclear body Hs cellular component 96.3 4.51e-23
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 89.4 1.63e-20
npBAF complex Hs cellular component 89.4 1.63e-20
nBAF complex Hs cellular component 96.3 4.51e-23

GO (InterProScan)

1 result

GO Term Analysis Type e-value
transcription coactivator activity Pfam molecular function 2.8E-29

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