Aniseed - Gene card

Gene Card

Best human hits

SLC19A1; SLC19A2; SLC19A3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000070

Gene Model ID

KH2012:KH.C1.1060

Location

KhC1:5789743..5794139

Transcript Models and Sequences

KH2012:KH.C1.1060.v1.A.ND1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000009836
ENSEMBL	ENSCING00000019484
NCBI Reference Sequence	XM_002131022.4

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
MFS_trans_sf	SUPERFAMILY	MFS transporter superfamily
Folate_carrier	Pfam	Reduced folate carrier
Folate_carrier	PIRSF	Reduced folate carrier
Folate_carrier	TIGRFAM	Reduced folate carrier
Folate_carrier	PANTHER	Reduced folate carrier

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
plasma membrane	Orthology	cellular component
integral component of plasma membrane	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
basolateral plasma membrane	Blast	cellular component
apical plasma membrane	Blast	cellular component
transmembrane transport	Orthology	biological process
organic substance transport	Orthology	biological process
ion transport	Orthology	biological process
small molecule binding	Blast	molecular function
anion binding	Blast	molecular function
heterocyclic compound binding	Blast	molecular function
organic cyclic compound binding	Blast	molecular function

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
plasma membrane	Hs	cellular component
folic acid transporter activity	Hs	molecular function
thiamine transmembrane transporter activity	Hs	molecular function
folic acid transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
vitamin transmembrane transport	Hs	biological process
vitamin transport	Hs	biological process
thiamine transmembrane transport	Hs	biological process
vitamin transmembrane transporter activity	Hs	molecular function

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	418	1.50e-142
folic acid binding	Hs	molecular function	330	6.28e-107
plasma membrane	Hs	cellular component	418	1.50e-142
integral component of plasma membrane	Hs	cellular component	330	6.28e-107
folic acid transporter activity	Hs	molecular function	418	1.50e-142
reduced folate carrier activity	Hs	molecular function	330	6.28e-107
thiamine transmembrane transporter activity	Hs	molecular function	418	1.50e-142
methotrexate transporter activity	Hs	molecular function	330	6.28e-107
membrane	Hs	cellular component	418	1.50e-142
integral component of membrane	Hs	cellular component	418	1.50e-142
basolateral plasma membrane	Hs	cellular component	330	6.28e-107
apical plasma membrane	Hs	cellular component	330	6.28e-107
vitamin transmembrane transporter activity	Hs	molecular function	418	1.50e-142

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
integral component of membrane	PANTHER	cellular component	3.3E-231
vitamin transport	PANTHER	biological process	3.3E-231
vitamin transmembrane transporter activity	PANTHER	molecular function	3.3E-231