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GENE CARD

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  1. Gene 'KH2012:KH.C1.1052' > 
  2. Gene 'KH2012:KH.C1.1045'

Gene Card

Best human hits

CPN2; LGR5; LRRC15

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000053

Gene Model ID

KH2012:KH.C1.1045

Location

KhC1:1815469..1820761

Transcript Models and Sequences

  KH2012:KH.C1.1045.v1.A.SL1-1
KH2012:KH.C1.1045.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000004822
ENSEMBL ENSCING00000013790
NCBI Reference Sequence XM_002123744.3
Collections

Gateway full ORF

2 results

cima875913

Plate: VES67_I19

cima8109611

Plate: VES73_C19

Gene collection 1 (N. Satoh)

2 results

citb043e23

Plate: R1CiGC33c02

ciht020i04

Plate: R1CiGC43n11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily
Leu-rich_rpt Pfam Leucine-rich repeat
Leu-rich_rpt ProSiteProfiles Leucine-rich repeat
Leu-rich_rpt_typical-subtyp SMART Leucine-rich repeat, typical subtype

GOSlim

21 results

GO Term Annotation Origin Type
signal transducer activity Blast molecular function
transmembrane signaling receptor activity Blast molecular function
G-protein coupled receptor activity Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
cytoplasm Blast cellular component
Golgi apparatus Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
enzyme regulator activity Blast molecular function
extracellular exosome Blast cellular component
metallopeptidase activity Blast molecular function
protein kinase binding Blast molecular function
protein kinase activity Blast molecular function
macromolecular complex binding Blast molecular function
signaling receptor activity Blast molecular function
extracellular region part Blast cellular component
Golgi membrane Blast cellular component
extracellular space Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
fibronectin binding Hs molecular function 97.4 5.85e-21
metallocarboxypeptidase activity Hs molecular function 97.1 6.80e-21
protein kinase inhibitor activity Hs molecular function 97.4 5.85e-21
signal transducer activity Hs molecular function 96.7 1.50e-20
transmembrane signaling receptor activity Hs molecular function 96.7 1.50e-20
G-protein coupled receptor activity Hs molecular function 96.7 1.50e-20
protein binding Hs molecular function 97.4 5.85e-21
collagen binding Hs molecular function 97.4 5.85e-21
extracellular region Hs cellular component 97.1 6.80e-21
cytoplasm Hs cellular component 97.4 5.85e-21
Golgi apparatus Hs cellular component 96.7 1.50e-20
plasma membrane Hs cellular component 96.7 1.50e-20
integral component of plasma membrane Hs cellular component 96.7 1.50e-20
membrane Hs cellular component 97.4 5.85e-21
integral component of membrane Hs cellular component 97.4 5.85e-21
protein-hormone receptor activity Hs molecular function 96.7 1.50e-20
enzyme regulator activity Hs molecular function 97.1 6.80e-21
extracellular matrix Hs cellular component 97.4 5.85e-21
trans-Golgi network membrane Hs cellular component 96.7 1.50e-20
laminin binding Hs molecular function 97.4 5.85e-21
extracellular exosome Hs cellular component 97.4 5.85e-21
blood microparticle Hs cellular component 97.1 6.80e-21

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 9.4E-13

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