Aniseed - Gene card

Gene 'KH2012:KH.C1.1043'

Gene Card

Best human hits

MTF1; ZNF143; ZNF76

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000051

Gene Model ID

KH2012:KH.C1.1043

Location

KhC1:6346694..6354063

Transcript Models and Sequences

KH2012:KH.C1.1043.v1.A.SL1-1
KH2012:KH.C1.1043.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000012713
NCBI Reference Sequence	NM_001128888.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cits032k02

Plate: R1CiGC34i05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Metal_TF1	PANTHER	Metal regulatory transcription factor 1

GOSlim

16 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular	Orthology	cellular component
transcription regulatory region DNA binding	Blast	molecular function
enzyme binding	Blast	molecular function

GO (Orthology)

4 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
regulation of transcription, DNA-templated	Hs	biological process
intracellular	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	311	3.52e-97
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	311	3.52e-97
core promoter binding	Hs	molecular function	311	3.52e-97
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	311	3.52e-97
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	182	1.60e-50
nucleic acid binding	Hs	molecular function	311	3.52e-97
DNA binding	Hs	molecular function	311	3.52e-97
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	311	3.52e-97
transcription coactivator activity	Hs	molecular function	311	3.52e-97
protein binding	Hs	molecular function	311	3.52e-97
nucleus	Hs	cellular component	311	3.52e-97
nucleoplasm	Hs	cellular component	311	3.52e-97
histone acetyltransferase binding	Hs	molecular function	311	3.52e-97
sequence-specific DNA binding	Hs	molecular function	182	1.60e-50
metal ion binding	Hs	molecular function	311	3.52e-97

GO (InterProScan)