Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004746
NCBI Reference Sequence	NM_001078306.1
NCBI Reference Sequence	XM_018814943.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl009h12

Plate: R1CiGC09m24

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
R3H_dom	Pfam	R3H domain
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
R3H_dom_sf	SUPERFAMILY	R3H domain superfamily
NFX1_fam	PANTHER	Transcription factor NFX1 family
Znf_NFX1	Pfam	Zinc finger, NF-X1-type
Znf_NFX1	SMART	Zinc finger, NF-X1-type
R3H_dom	ProSiteProfiles	R3H domain
Zinc_finger_PHD-type_CS	ProSitePatterns	Zinc finger, PHD-type, conserved site

GOSlim

21 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
zinc ion binding	Orthology	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
defense response	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
inflammatory response	Hs	biological process
zinc ion binding	Hs	molecular function
viral process	Hs	biological process
transferase activity	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	670	0.0
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	670	0.0
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	670	0.0
nucleic acid binding	Hs	molecular function	670	0.0
DNA binding	Hs	molecular function	670	0.0
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	670	0.0
RNA binding	Hs	molecular function	670	0.0
binding	Hs	molecular function	49.3	1.69e-05
nucleus	Hs	cellular component	670	0.0
nucleolus	Hs	cellular component	670	0.0
cytosol	Hs	cellular component	670	0.0
plasma membrane	Hs	cellular component	670	0.0
zinc ion binding	Hs	molecular function	670	0.0
membrane	Hs	cellular component	258	3.38e-72
integral component of membrane	Hs	cellular component	258	3.38e-72
transferase activity	Hs	molecular function	670	0.0
metal ion binding	Hs	molecular function	670	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	3.92E-12
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.0E-289
nucleus	Pfam	cellular component	5.6E-6
regulation of transcription, DNA-templated	Pfam	biological process	5.6E-6
zinc ion binding	Pfam	molecular function	5.6E-6

Gene Card

Best human hits

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Transcript Models and Sequences