Aniseed - Gene card

External Database Gene Card

External database links

6 results

Database	Gene ID
ENSEMBL	ENSCING00000005163
ENSEMBL	ENSCING00000018236
NCBI Reference Sequence	NM_001078472.1
NCBI Reference Sequence	XM_018816114.1
NCBI Reference Sequence	XM_018816133.1
NCBI Reference Sequence	XM_018816158.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cign062a04

Plate: R1CiGC42d10

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type

GOSlim

34 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Blast	molecular function
double-stranded DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
gamete generation	Orthology	biological process
spermatogenesis	Orthology	biological process
zinc ion binding	Orthology	molecular function
cell proliferation	Orthology	biological process
enzyme binding	Blast	molecular function
protein homodimerization activity	Orthology	molecular function
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
signal transduction	Orthology	biological process
response to lipid	Orthology	biological process
signaling receptor activity	Orthology	molecular function
cellular response to organic substance	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
anion binding	Blast	molecular function
binding	Blast	molecular function
nuclear part	Blast	cellular component

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
steroid hormone receptor activity	Hs	molecular function
nuclear receptor activity	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
gamete generation	Hs	biological process
spermatogenesis	Hs	biological process
zinc ion binding	Hs	molecular function
cell proliferation	Hs	biological process
intracellular steroid hormone receptor signaling pathway	Hs	biological process
protein homodimerization activity	Hs	molecular function
steroid hormone mediated signaling pathway	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	131	1.25e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	479	6.67e-164
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	131	1.25e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	479	6.67e-164
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	479	6.67e-164
DNA binding	Hs	molecular function	479	6.67e-164
chromatin binding	Hs	molecular function	131	1.25e-32
double-stranded DNA binding	Hs	molecular function	131	1.25e-32
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	479	6.67e-164
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	131	1.25e-32
steroid hormone receptor activity	Hs	molecular function	479	6.67e-164
transcription coactivator activity	Hs	molecular function	131	1.25e-32
nuclear receptor activity	Hs	molecular function	479	6.67e-164
9-cis retinoic acid receptor activity	Hs	molecular function	123	7.85e-30
protein binding	Hs	molecular function	131	1.25e-32
phospholipid binding	Hs	molecular function	131	1.25e-32
nucleus	Hs	cellular component	479	6.67e-164
nucleoplasm	Hs	cellular component	479	6.67e-164
transcription factor complex	Hs	cellular component	479	6.67e-164
zinc ion binding	Hs	molecular function	479	6.67e-164
lipid binding	Hs	molecular function	131	1.25e-32
enzyme binding	Hs	molecular function	131	1.25e-32
protein homodimerization activity	Hs	molecular function	479	6.67e-164
sequence-specific DNA binding	Hs	molecular function	479	6.67e-164
metal ion binding	Hs	molecular function	479	6.67e-164
RNA polymerase II transcription factor complex	Hs	cellular component	131	1.25e-32

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	5.0E-16
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	4.5E-34
nucleus	SMART	cellular component	4.5E-34
regulation of transcription, DNA-templated	SMART	biological process	4.5E-34
zinc ion binding	SMART	molecular function	4.5E-34
steroid hormone mediated signaling pathway	SMART	biological process	8.8E-23
sequence-specific DNA binding	SMART	molecular function	4.5E-34

Gene Card

Best human hits

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Transcript Models and Sequences