Aniseed - Gene card

Gene 'Boleac.CG.SB_v3.S369...'

Gene Card

Best human hits

NFX1; NFXL1; ZNFX1

Species

B.leachii

Unique Gene ID

Boleac.g00008478

Gene Model ID

Boleac.CG.SB_v3.S369.g08478

Location

S369:123164..126500

Transcript Models and Sequences

Boleac.CG.SB_v3.S369.g08478.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
R3H_dom	SMART	R3H domain
NFX1_fam	PANTHER	Transcription factor NFX1 family
R3H_dom_sf	SUPERFAMILY	R3H domain superfamily
Znf_NFX1	SMART	Zinc finger, NF-X1-type
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
Znf_NFX1	Pfam	Zinc finger, NF-X1-type
R3H_dom	ProSiteProfiles	R3H domain
R3H_dom	Pfam	R3H domain
Zinc_finger_PHD-type_CS	ProSitePatterns	Zinc finger, PHD-type, conserved site
R3H_dom_sf	Gene3D	R3H domain superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
inflammatory response	Hs	biological process
zinc ion binding	Hs	molecular function
viral process	Hs	biological process
transferase activity	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	700	0.0
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	700	0.0
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	700	0.0
nucleic acid binding	Hs	molecular function	700	0.0
DNA binding	Hs	molecular function	700	0.0
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	700	0.0
RNA binding	Hs	molecular function	700	0.0
binding	Hs	molecular function	55.1	2.85e-07
nucleus	Hs	cellular component	700	0.0
nucleolus	Hs	cellular component	700	0.0
cytosol	Hs	cellular component	700	0.0
plasma membrane	Hs	cellular component	700	0.0
zinc ion binding	Hs	molecular function	700	0.0
membrane	Hs	cellular component	252	5.31e-70
integral component of membrane	Hs	cellular component	252	5.31e-70
transferase activity	Hs	molecular function	700	0.0
metal ion binding	Hs	molecular function	700	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.2E-16
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.9E-296
nucleus	Pfam	cellular component	1.1E-5
regulation of transcription, DNA-templated	Pfam	biological process	1.1E-5
zinc ion binding	Pfam	molecular function	1.1E-5