Aniseed - Gene card

Gene Card

Best human hits

DDX3X; DDX3Y; DDX4

Species

B.leachii

Unique Gene ID

Boleac.g00000072

Gene Model ID

Boleac.CG.SB_v3.S0.g00072

Location

S0:698112..702379

Transcript Models and Sequences

Boleac.CG.SB_v3.S0.g00072.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Helicase_C	SMART	Helicase, C-terminal
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_C	CDD	Helicase, C-terminal
RNA-helicase_DEAD-box_CS	ProSitePatterns	ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
Helicase_C	Pfam	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

78 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
immune system process	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
GTPase activity	Hs	molecular function
ATP-dependent DNA helicase activity	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial outer membrane	Hs	cellular component
cytosol	Hs	cellular component
eukaryotic translation initiation factor 3 complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
apoptotic process	Hs	biological process
chromosome segregation	Hs	biological process
transcription factor binding	Hs	molecular function
poly(A) binding	Hs	molecular function
eukaryotic initiation factor 4E binding	Hs	molecular function
extrinsic apoptotic signaling pathway via death domain receptors	Hs	biological process
response to virus	Hs	biological process
regulation of gene expression	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
RNA secondary structure unwinding	Hs	biological process
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
Wnt signaling pathway	Hs	biological process
nuclear speck	Hs	cellular component
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
nucleoside-triphosphatase activity	Hs	molecular function
negative regulation of translation	Hs	biological process
cytosolic small ribosomal subunit	Hs	cellular component
positive regulation of cell growth	Hs	biological process
negative regulation of cell growth	Hs	biological process
negative regulation of protein complex assembly	Hs	biological process
translation initiation factor binding	Hs	molecular function
DNA duplex unwinding	Hs	biological process
RNA strand annealing activity	Hs	molecular function
stress granule assembly	Hs	biological process
secretory granule lumen	Hs	cellular component
intracellular signal transduction	Hs	biological process
RNA stem-loop binding	Hs	molecular function
cytoplasmic ribonucleoprotein granule	Hs	cellular component
ribosome biogenesis	Hs	biological process
mature ribosome assembly	Hs	biological process
ribosomal small subunit binding	Hs	molecular function
positive regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
CTPase activity	Hs	molecular function
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
protein serine/threonine kinase activator activity	Hs	molecular function
innate immune response	Hs	biological process
cadherin binding	Hs	molecular function
positive regulation of translation	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of translational initiation	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cellular response to arsenic-containing substance	Hs	biological process
cellular response to osmotic stress	Hs	biological process
positive regulation of protein serine/threonine kinase activity	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
intrinsic apoptotic signaling pathway	Hs	biological process
positive regulation of G1/S transition of mitotic cell cycle	Hs	biological process
ficolin-1-rich granule lumen	Hs	cellular component
negative regulation of intrinsic apoptotic signaling pathway	Hs	biological process

GO (Blast)

44 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	707	0.0
nucleic acid binding	Hs	molecular function	707	0.0
DNA binding	Hs	molecular function	707	0.0
RNA binding	Hs	molecular function	707	0.0
GTPase activity	Hs	molecular function	698	0.0
ATP-dependent DNA helicase activity	Hs	molecular function	698	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	707	0.0
helicase activity	Hs	molecular function	707	0.0
protein binding	Hs	molecular function	698	0.0
ATP binding	Hs	molecular function	707	0.0
extracellular region	Hs	cellular component	698	0.0
nucleus	Hs	cellular component	707	0.0
nucleolus	Hs	cellular component	707	0.0
cytoplasm	Hs	cellular component	707	0.0
mitochondrion	Hs	cellular component	698	0.0
mitochondrial outer membrane	Hs	cellular component	698	0.0
cytosol	Hs	cellular component	707	0.0
eukaryotic translation initiation factor 3 complex	Hs	cellular component	698	0.0
transcription factor binding	Hs	molecular function	698	0.0
poly(A) binding	Hs	molecular function	698	0.0
eukaryotic initiation factor 4E binding	Hs	molecular function	698	0.0
cytoplasmic stress granule	Hs	cellular component	698	0.0
membrane	Hs	cellular component	707	0.0
nuclear speck	Hs	cellular component	698	0.0
hydrolase activity	Hs	molecular function	707	0.0
ATPase activity	Hs	molecular function	698	0.0
nucleoside-triphosphatase activity	Hs	molecular function	698	0.0
cytosolic small ribosomal subunit	Hs	cellular component	698	0.0
translation initiation factor binding	Hs	molecular function	698	0.0
RNA strand annealing activity	Hs	molecular function	698	0.0
secretory granule lumen	Hs	cellular component	698	0.0
RNA stem-loop binding	Hs	molecular function	698	0.0
cytoplasmic ribonucleoprotein granule	Hs	cellular component	707	0.0
ribosomal small subunit binding	Hs	molecular function	698	0.0
P granule	Hs	cellular component	453	7.39e-150
CTPase activity	Hs	molecular function	698	0.0
protein serine/threonine kinase activator activity	Hs	molecular function	698	0.0
cadherin binding	Hs	molecular function	698	0.0
mRNA 5'-UTR binding	Hs	molecular function	698	0.0
perinuclear region of cytoplasm	Hs	cellular component	453	7.39e-150
extracellular exosome	Hs	cellular component	698	0.0
pi-body	Hs	cellular component	453	7.39e-150
piP-body	Hs	cellular component	453	7.39e-150
ficolin-1-rich granule lumen	Hs	cellular component	698	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	2.7E-51
ATP binding	Pfam	molecular function	2.7E-51