1 result
OVERVIEW
Click here to see the RNA-Seq Pipeline Protocol.
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Be careful, FPKM & RPKM does not permit you to compare a gene across different conditions or experiments.
OVERVIEW
Be careful, RLE and 2RLE does not permit you to compare a gene across different experiments.
Oocytes of a single individual of Phallusia mammillata (Roscoff, France) were fertilized by a mixture of sperm of two individuals and development was followed microscopically. Embryos were snapfrozen in liquid nitrogen at the appropriate stage and kept at -80°C. Samples at stage 0, 8, 12, 15, 21, 26 were collected from the same fertilzation, while sample from stage 11 was independently collected from a different individual. Total RNA was prepared with the RNA II kit of Magerey Nagel and the quality was checked with the Bioanalyzer, all samples had a RIN value of higher than 9. Strand specific libraries were constructed and the sequencing (50PE) was performed with Illumina HiSeq 2000 technology (BGI, Hong Kong, China).
| Assay platform | Illumina HiSeq 2000 | |
| Layout | Paired-end | |
| Stranded | Yes | |
| Read length | 49 | |
| Normalized data types |
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| Wild type - Replica 1 | ||
| Territories | whole embryo - | |
| Biomaterial(s) | P.mammillata, Stage 0 (Unfertilized egg) | |
| P.mammillata, Stage 8 (64-cell) | ||
| P.mammillata, Stage 11 (early gastrula) | ||
| P.mammillata, Stage 12 (mid gastrula) | ||
| P.mammillata, Stage 15 (mid neurula) | ||
| P.mammillata, Stage 21 (mid tailbud I) | ||
| P.mammillata, Stage 26 (hatching larva) | ||
| Wild type - Replica 2 | ||
| Territories | whole embryo - | |
| Biomaterial(s) | P.mammillata, Stage 0 (Unfertilized egg) | |
| P.mammillata, Stage 8 (64-cell) | ||
| P.mammillata, Stage 11 (early gastrula) | ||
| P.mammillata, Stage 12 (mid gastrula) | ||
| P.mammillata, Stage 15 (mid neurula) | ||
| P.mammillata, Stage 21 (mid tailbud I) | ||
| P.mammillata, Stage 26 (hatching larva) | ||
10 results
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | No expression - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B4.1 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B5.2 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B7.6 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B7.6 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B7.6 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | B7.6 cell pair - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | posterior endodermal strand (B8.11 line) - posterior endodermal strand (B8.12 line) - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | posterior endodermal strand (B8.11 line) - posterior endodermal strand (B8.12 line) - |
Conversion to Aniseed format of data from Remi Dumollard et al. (Ascidian BioCell Team, LBDV, Villefranche-sur-mer, France).
Gene name : Pem1
| Stained molecule | Phmamm.CG.MTP2014.S31.g01228 (Phmamm.CG.MTP2014.S31.g01228) |
| Stained region(s) | No expression - |
