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RNA-Seq transcriptome profiles (by Experiment)

1 result

OVERVIEW

   Expression profile summary from all experiments in WT and mutant conditions:
FPKM & RPKM

Click here to see the RNA-Seq Pipeline Protocol.
You can show/hide lines in the charts by clicking on it in the legend part.
You can see more details by clicking on a point and then, on the link which will appear.

Be careful, FPKM & RPKM does not permit you to compare a gene across different conditions or experiments.

Download FPKM & RPKM data

OVERVIEW

   Expression profile summary from all experiments in WT and mutant conditions:
Relative Log Expression RLE

Be careful, RLE and 2RLE does not permit you to compare a gene across different experiments.

Download RLE Relative Log Expression data

RNA-Seq Experiment n°34137

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Oocytes of a single individual of Halocynthia roretzi (Aomori, Japan) were fertilized by sperms of an another single individual and development was followed microscopically. Embryos were snapfrozen in liquid nitrogen at the appropriate stage and kept at -80°C. Total RNA was prepared with the AGPC method and the quality was checked with the Bioanalyzer, most samples had a RIN value of higher than 9. Strand specific libraries were constructed and the sequencing (50PE) was performed with Illumina HiSeq 2000 technology (BGI, Hong Kong, China).

Assay platform Illumina HiSeq 2000
Layout Paired-end
Stranded Yes
Read length 49
Normalized data types
  • FPKM
  • RLE
Wild type - Replica 1
Territories whole embryo -
Biomaterial(s) H.roretzi, Stage 0 (Unfertilized egg)
H.roretzi, Stage 8 (64-cell)
H.roretzi, Stage 12 (mid gastrula)
H.roretzi, Stage 21 (mid tailbud I)
H.roretzi, Stage 26 (hatching larva)
Wild type - Replica 2
Territories whole embryo -
Biomaterial(s) H.roretzi, Stage 0 (Unfertilized egg)
H.roretzi, Stage 8 (64-cell)
H.roretzi, Stage 12 (mid gastrula)
H.roretzi, Stage 15 (mid neurula)
H.roretzi, Stage 21 (mid tailbud I)
H.roretzi, Stage 26 (hatching larva)

In Situ Experiment Data

6 results

Experiment data ( results)

H.roretzi, Stage 0 (Unfertilized egg)

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WT Halocynthia roretzi egg probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed at a high level in eggs.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) whole egg -

H.roretzi, Stage 4 (8-cell)

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WT Halocynthia roretzi 8-cell stage embryo probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed in the whole embryo.
Original comment:Suz12 has more transcripts in the animal than vegetal hemispheres from the 8-cell to the 110-cell stage.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) whole embryo -

H.roretzi, Stage 5a (early 16-cell)

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Animal (left) and vegetal (right) views of a WT Halocynthia roretzi 16-cell stage embryo probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed in the whole embryo.
Original comment:Suz12 has more transcripts in the animal than vegetal hemispheres from the 8-cell to the 110-cell stage.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) whole embryo -

H.roretzi, Stage 6b (late 32-cell)

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Animal view of a WT Halocynthia roretzi 32-cell stage embryo probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed in the whole embryo.
Original comment:Suz12 has more transcripts in the animal than vegetal hemispheres from the 8-cell to the 110-cell stage.
Black arrows indicate germline cells without distinct signals.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) whole embryo -

H.roretzi, Stage 8 (64-cell)

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Animal view of a WT Halocynthia roretzi 64-cell stage embryo probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed in the whole embryo.
Original comment:Suz12 has more transcripts in the animal than vegetal hemispheres from the 8-cell to the 110-cell stage and showed no enrichment of mRNAs in germline cells at later stages (at the 64- and 110-cell stages; black arrows) when increased levels of H3K27me3 were observed.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) whole embryo -

H.roretzi, Stage 10 (110-cell)

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Animal (left) and vegetal (right) views of a WT Halocynthia roretzi 110-cell stage embryo probed for Suz12 expression, a member of the PRC2 complex that catalyzes H3K27me3.
Suz12 is expressed in the animal hemisphere, in most of B-line blastomers and A-line in nerve cord precursors.
Original comment:Suz12 has more transcripts in the animal than vegetal hemispheres from the 8-cell to the 110-cell stage and showed no enrichment of mRNAs in germline cells at later stages (at the 64- and 110-cell stages; black arrows) when increased levels of H3K27me3 were observed.

Stained molecule Harore.CG.MTP2014.S68.g10825 (SUZ12)
Stained region(s) A8.15 cell pair - A8.16 cell pair - A8.7 cell pair - A8.8 cell pair - a line - B7.5 cell pair - B7.6 cell pair - B7.7 cell pair - B8.15 cell pair - B8.16 cell pair - B8.5 cell pair - B8.6 cell pair - B8.7 cell pair - B8.8 cell pair - b line -