- Construct 'CONS00001238' >
- Construct 'CONS00001542' >
- Construct 'CONS00001554' >
- Construct 'CONS00000382' >
- Construct 'CONS00000623'
Construct
ID
CONS00000623
Name
pCi-RhoD -2606/82::LacZ
Min Promoter
Endogenous Promoter
Reporter
Comment
the FoxF and Ets1/2 regulatory motifs were absent. The complete cis regulatory region drives RhoD expression in notochord, TVC, muscles and mesenchyme. Here, the absence of the regulatory motifs abolish expression in TVC and muscles.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -2672/+17
Show sequence
Length: 2,688
TTTCAATTTAAAAACTTTACAGCGGTTTATCAAATTTATTAGAATGAAGAATTTCAAATG
TGTAGAATTGTATTGAGATATCTAAGAGAGCAACGTAAACATAAAGTAAACAGATAACAC
CCAACTGTCGTTCACCAGAAATGCAAACACTCAGACCGCGTTCCATATATAGTATGGTGG
GGGAGATGGGACACTTTTTCATTCTATTTTCTCGTTCCATTTAGTAGTAAACAAAGAACA
CTTGAAGAAATATAAAAACCACATTCCCACAATTCCCATAGACCGTTATTGTTAATTGTT
TCACAATCAAAATATTTGGATAATATGTGCTAAAGGCGTCCTATCTTCCCCCACAGTACT
ATAGTAGGGTGGGGAAGTTGGGCAACCTTTTTATTCCACTTTATCGCCCCATTTGGTAGT
AAACAAAGAACAGTCAAAGAATCGTTAAACCGTATCCTTACCGCTGGTAATTGTTCAAAA
CACGATCAAGATATTTAAATACTATATACGTTCTAATGTTGTTTCGTTTTCTCCACCCTA
CTATATGTTATTAAAATTTGATTCTTCCTGTCTTTTCTATCATGAAGCAATATCATTGAT
GTTTATACTAACTCCAAATGTTCATGTATATGTATACATTCATATGTTTTGCATATTTTT
ATATACAGAACCAATGTTAAATATACTGATATATATTTACTAATACATACCTATATAACA
GTTATATAAACACCTATATACCCACTGTACCCAATAAATAATATATACATATACAGCATA
AGTCTATTACACCACCTTTTAACAAATACACATATATTCGTCTTAAGCCTGTCTTTACCA
ATAATACAGAGTACCCTTAAAACATGTTATCGTGTACCTCATCCTATCTCACTAGACGAG
ACATTTTACAGTAGAAACAAAATAAGCTCTGATTGTGTTTCGGTTGCGACGAATGTTGCT
ACACCATGGTCTATTAATAAAGACGTGTCGGCTGTATAATAATGTAGTCTACACCACGGT
CAATTAAATACGCCAAGTATGCTTATATAATACATTGAGTAGGACAGTGGGCCATGTATA
CACAAATATATGGACTATTTATAAGTGGGTTAATGTGTGTATGTTGTTGCTAGTATATAG
CTATTAGCAGTGTGATAAACGTATACAAGAATATTGCATCTGCATTCGCCTTCCAGTCTG
TTCCTGGATTCTTGTTTATGTTAAACAGTTCTACAAACCTAAGGCACACAGCGCGTGCGT
TCGTGCTGGTGTGTATAAAAACACGCCCTCATTGCGTAAACGCTTATTGACTGACAAGAC
CACAGTTTCCTGTGAGTTGCGCGAGTCTATATACTGCGGCAAAAGACGTTAGAAGGCTGT
GACCTGCTGGAAAGCCTTTGCCAGCTAACCTACCGTATCGTATTTAGCGGCTAGTCTTTC
AAGTCAAGTTGTACGAATCGTTTTAGTTGTATTCATACGTCGCGAGCGGAGTTAATTATA
GTGACAGATTTTTGAACTAAATGAACGTAGTTATAAATATTGTGAGTGAAATTCAAGCAG
TAAGTGTATATAGTTAGAAGCATATGAAGTCATGGTGTATACCATTTCGCAAAGTGTTAA
AGAGGACAATTCAATACAGTCAACACGGTGTATAAAGTGCCGAAGTATGGGTTTACACTA
TTTTAATATGGTTTGTGTGAGTTGTTGTACATTTAATTTTTGAAATCAAGCTCACTGTAC
AGTTTGACGACTTGCGAATAGGTCGAACATGATTACATTTTAGCCAGAATTAGTTATGAG
TTTCATGGTTAATTTTACTATTTCCTAAACGCTGTCAATTTACTGTGTATTATTAGATCT
ACTAGCAATAAAGTAATGCATTGCACGAGGGTTTAGTAACAAAAGCATGTTAATAACCGG
GTTATAAATAACTCAGAACGTTTCGAAAATCGACATAGTGACTGGCCTACTATATCACCG
AAGACGTAATAGACTATATATGCATAACACGCACATGCTTTGCGCCATGTATATATATGA
TATTTGAATATAGATTTGATCACGCCGAAAGCTGTCCAGACTAAGAATGCTTACAAAGGT
AAGTTTCAGACAGTTCTATAAAGTTACACCAGCGTTATACAAAGGATCTGTATGGCAACG
TCAGACAATTTGCGTAACAGGAAGCAGAACTACTTGTTTCTAACGTCACAGTCCCCTAGC
GGCCTAGTGAATAACGGTGGCGAAAGATAGATAGTAAGTTTTTTTTATTGTTTTATGTCC
TTGGAGAGGTAAATAAATTAACTAGGAGATGATTGAAAAAACATTATTACGTCCACAATA
TGAGTATAGTATAGCATTGTAAGGTTGTATGTTTGAGTAAGACTATCTAAAAAAGATAAA
AAAGAGATGAAGTCTAGGATTTGTTTTTCTTTTTACAGCATTGTCGTTCAATTACCGCGT
ATATATGTATTTGTATTTTTAAAATTTAGCGTATATTTAGCTGCATTTAAAGATAAAATG
GGCTACTAAAGAATCCTCCCCAACTAACTGCTAGTCTAAATAGTATTCTTCACTACTGTA
ACAAAGTTGCATTTCTTCTTTTAGTGACTGGCATCACTTCTTAGAATGTAGTTGCTAATT
TTAACTTGTAAAGCCAAAACTATACACAAACAATGGAAAGGATACCCA