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- Region 'REG00000035' >
- Region 'REG00001590'
Cis-regulatory Region
Name
Cirobu.REG.Kh2012.S544:4780-5236|Dmrt1
Short name
Dmrt1_-343bp (Tokuhiro et al., 2017)
Region ID
REG00001590
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
When compared to the -386bp Dmrt1 cis-regulatory region, the -343bp element showed a decreased activity in anterior neural a6.5 cells but an increased activity in vegetal cells.
Modification of Cirobu.REG.Kh2012.S544:4737-5236|Dmrt1 by deletion
- Cirobu.REG.Kh2012.S544:4199-5236|Dmrt1 REG00001587 [ regulatory_region (extended_promoter) ]
4,7805,236
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,780 / 5,236] on scaffold KhS544
There are two TSS in this Dmrt1 cis-regulatory element. The sequence is 457bp long from the first TSS and 343bp long from the second TSS of Dmrt1. This cis-regulatory element is active in anterior neural a6.5 cells and in vegetal cells.
Show sequence
Length: 457
TGTTGTGGCAATGTACATTGTAACTTCCACAAACCTCTCAGAGGGCAAACACATTAAGCA
AACTGAATTTGCCAAGTACTTCGGGAAGTCACTGATAAGCGGACAATACGAAGCGATCAC
AGGGAATTGTCGCACGCCAGAATGTAAACAAAAACATCGCCTGTGCACCGCGCGATCGAA
GACACACAGCGCTGACTAATTGACCAACACAAAAGCGAGGAAAGAAAAAAAAGCGAAAAC
GAGAACGGGATATTAATTGTACACGATTGTGACGTAAATTCGAGGCATTTTTTCTTCCGA
AATCGAGCGGTTTAAATACCTCGCGTCTTTATTAGGTACAATCATATTGCCTTGATACCT
TGCTTAGAACAGTGAATACATATAAATCGTATTAAAAGCTTTAGAGTGTTAAACCAAAGA
GTTACAGAAATTATAGCAAACAGTTCGTTTAACTGGC
