Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00001574'

Cis-regulatory Region

Name

Cirobu.REG.KhL96:469627-471527|Tbx2/3

Short name

Tbx2/3 intron #3 (notochord 1937bp CRM) cluster (José-Edwards 2013)

Region ID

REG00001574

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Diana S. José-Edwards (2023-02-23)

Annotator

Marion Gueroult-Bellone (2023-02-23)

Curator

Marion Gueroult-Bellone (2023-02-23)


Description

Overview of functional TF binding sites in this region

469,627471,527

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [469,627 / 471,527] on scaffold KhL96

This 2917bp region is located in the 3rd and 2nd introns of Tbx2/3. Primers used to amplify this region : Tbx2/3 intron #3 cluster F: TtctagaCATGGTGCTTTGGACGCGTTACC XbaI and Tbx2/3 intron #3 cluster R: ATccatggGGAATGGGGATTACGGTAGTCGAC This region is active mainly in the notochord, and a bit in tail muscles and epidermis. Note that sequence in the article is 1937bp long, and only 1901bp long when blasting primers against KH sequence assembly.

Show sequence

Length: 1,901

CATGGTGCTTTGGACGCGTTACCAGACATGCCTCCCTTGATATATCCATGCTGAGTTTTA
CAGCGTTATATTCAGTGCCATAACCCGAGTTTGAAAGGGACATAATTCGTCAAAGCGTTC
TTGTGGCCGGTTAGGCCCATACTAAGGTCAGCTTGGCGCCATGAACAGTTAGCAGCCAGC
AGGGGTCCATAGGGAGAAAGAGGCTTAACGTACGGTTCTGTGTTAGACGCCTTAGAGATG
CCGGCGTCTCAGCACGTGTTAGAAGATATTTATTAACAAATTTGATTTACATCAATGGCA
CGGTTAATTGTCTGCTTCTCACAGATTGTGCAGTTAACCCCGAACGTAGTTTATTAACCT
AATGGAAAGTTCGCTCTCTCGGGCTTTGGAGCGTCGGCTCTATTTTAACTCCTAGCTTTT
ATTTGCAGACCATTTTGAACTCAATGCACAAGTACCAGCCACGCTTCCACGTTGTGAGGT
GTGGGGACCTTGCGAAGCTTCCATACTGTGCGTTCAGGACGTACGTGTTCAAGGAGATGC
AGTTCATCGCAGTGACAGCATACCAGAACGAGAAGGTGACCGTCAAGTTACTTATTACGC
CTACCGTGCGATTTTAAGTCGTTTTGCCTCCTTATCAACAGTCAGAACAATTCTGGCCGC
CGTGGTATCTTAACACTGGCGACTCTAACTCTGTAGGAGTCACGACTGCCACTTACAAAG
GCGCCTATGTTTGATCCCACCCGATAGTGAGATGTTATGTAAGCATCTTTAGAATCCCAG
CTATTACGTTCGTGTGGGAAGAAGTCCTACTGTCCAAGACGTGTTTATACGCCAGGCGTC
ATGTGCTTGAAACTTACAAGTAGAGAGTTAACGCTTTCACTGCGAATACGACACACGTCT
TTGTCAACTTAGGAAACATTCTATGAATTGTTTGAAGTGCTAGGGTGGCGGCGACGTTTA
CACTCTTTTAGATCAAAGCAACGTCGTGTTAGCGCCTTGAGCCTTATGATCTCATAATGG
CTATGAAAACATAGATATCAGATACTAAGTTTAATAAGCGGGGAGTCGAAACCGAAATCG
GAAAATCTTGTTACATTCGCTTGTATTGAGACTTTTGAAGTACCGGCGAGTGGGCATGGC
TCATTTTTGAAATTCTTTTTTTTTGCGTTGGAAATGAAACTGAAACAAACTACACGCTCG
AGGTGGCTCAAAACCATTACAAAAGCTGTGCTAGCACGTCGCCTGCGCTTTGTAGACAGC
CAGCATACTTGACCAAGGGTGCGATTGCGAATCAAAACAAACAGATAAGATGGTAGGAGC
GGTCGTTCAATTTGTTTTAGCCTTCATTCTCCTCTGTGAGTTGACAATTGAACGACACGC
ACTTCTCGGGAACTTAGCTTTAATGTACAAAGTCCCACACCTGGCGCAATACATGTGTTA
TGACACGCTCTATCGCCTAGTTTCTGAAATCTCGCCAGACAAGACGTTGCAATTTCCCCG
GCCAGAAAACATGGACAATGTGTTCAAACACAAACATTTCCTGTAAACCACTCAAAAGGC
CCTTAAAATGACGCCTGAAATAGGCATAGGAATTTAAACGTTATAATGTGTGGACAGACA
GGGTAGTTAAATACGTTACAAAGTTCATTTGCCACCCAGCACAGTATTGTACTTTATGAC
ACTTGTGTTTATTCGTATAGTGGGACTAGTTATAAAATAAAACGGTTTATTCTCTGACAC
GTAAGTGTTAATCTATAAGCAATGTGACAAGAACAAATAACACGAAGGGGCGAAATCTAA
CGCTAGATCAACTGCGTGGCTTTCACATCTTTGGTGGTCGAGTAATACATAGCACTAAAC
CGAAACAATTATTTTTCGTCGACTACCGTAATCCCCATTCC