- Region 'REG00000656' >
- Region 'REG00000659' >
- Clone 'cien159540' >
- Region 'REG00001573'
Cis-regulatory Region
Name
Cirobu.REG.KhL96:456888-459805|Tbx2/3
Short name
Tbx2/3 -3008/-91 upstream (José-Edwards 2013)
Region ID
REG00001573
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Diana S. José-Edwards (2023-02-23)
Annotator
Marion Gueroult-Bellone (2023-02-23)
Curator
Marion Gueroult-Bellone (2023-02-23)
456,888459,805
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [456,888 / 459,805] on scaffold KhL96
This 2917bp region is located upstream (-3008/-91) of Tbx2/3 TSS. Primers used to amplify this region : Tbx2/3 UR#1 (-3008 to -91) F: ATgcatgcTGCACATAAGCCAGTTTATCGCTG and Tbx2/3 UR#1 (-3008 to -91) R: TGccatggATCTATGGAAAAGTTGAGTTCTAAGG This region is active in the anterior sensory vesicle, in the ventral trunk epidermis and in tail muscles.
Show sequence
Length: 2,918
TGCACATAAGCCAGTTTATCGCTGATAGTATTTCATTCCAGAGTAAATTTTATCGACTCC
GACGTGGAATATTATTTTTGTCACCGGTGATGACAGGAAAACAGGATGCAAGCGTCTTTA
GAGTATGCGGAAAGCGCAAAATGGGTAATCCATGTTAGAGGGTCGTCTAATGAAAATATG
ATATTACCTTGAATTAGAAACTTCGAAGTAAAGTTTATGCAAAGCCTAATATTATGAAAA
ATGCGCGAATTTTGCCTTTTGAATGAAAATCGCAAAAGTTAAAAAACGAGAATTTCGGCA
AAGGCAAGTTTTCTTAACTATTTATTTTTACGTTTTTTTTTAAATAACGCCTAACTTGTT
GAACAACACAGTCCTTCCGTTACTGGTTACGAACTTTAAGATATGTGACGATTAGCTACA
TTGCTGCATCAACAACGATCTTAACTGTAATATATACACATATTTCAATATGCCTTTACA
CAGTTGTGGTTAATGAAGACGCCTAAAAAACATTCACGAAACTTTGTATTTTCAAACTGC
GGTAAAACAGTCGTCAGTCTCGCTGAGTATTAATTAGTTTTCCTAAAAAGTGATCTGCTA
TGCATAGAAGGAGCTTATGTTGTTGTATGTTTACTTTATAAGTAATTCACTATACGCGTC
ATATCCAATATAATAATTGCTTCCAGTAATTGACACGTATACTTTTTAACGTGGCCAGGA
TGGTAAAGTAGGAATCACTCGTATGTGGATACGTGTATAGCGAGTACTTCAATTACATTA
CGAAAGTAATCAATACTGGTAGCGCTTGCTCCACTGCGCGGCGCTAGTGAGCTTGTTTCA
AAGTGGCAGCGAACGATTTATTTGATTGACAGCTGAACGGCTGCTCGTGTGAACTCGAGG
AATCAAACCGAACTATTCGCGAATACGGATTTTTTAAAACGAACTAAAGCATTTTCTATT
CTTGAATTTGTTAAAATGATGTTTTAATATCATATTTAGCTGATTGGGTAAGAGTTGAAT
TAAAGCGTTTAGTGTATTTTACGCAAACGAACGCTAAAAATTGTCATTGACTTTCCACGC
AAAATAAAGGGCGGCGATTTACAACAGTAGTTGTGTAGCTGAATAGCTGTGAAACGTAAA
GCGGACAGAGCTGGAAATTCTTTTTGTCGCCTGCCTCGGATGGTTAGAATGTGTCATAGT
GATTTGTCGGTGAACAAAGCATCGCGGTTGGTGTGAAACCGGTATTTAGAATCGTAGACA
TTCGGGCGTCGCTTATTCCCTTTCCTGTCATGCGTTAACAGGCGGTTGAAAGTGTCGGGC
CTGCATAAATGCATCTGATGTCTGTACCCTATGTACGGCGTCATTTAGACTAGGAGTCTG
ATCTTTATGTGATATGTAAATCCCATTTCAACGCCGGCTACGCTTTCATCTTTGCTTCAC
ACCTCGAACACGGACGCCACGCCTACGAATAGAGTCACTCATGAGGAAATTAAGACTTAA
CTTATGCGCGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGCCAGGATGGTAAAGTAGGAATCACTCGTATGTGGATACGTGTATAGCGAGTAC
TTCAATTACATTACGAAAGTAATCAATACTGGTAGCGCTTGCTCCACTGCGCGGCGCTAG
TGAGCTTGTTTCAAAGTGGCAGCGAACGATTTATTTGATTGACAGCTGAACGGCTGCTCG
TGTGAACTCGAGGAATCAAACCGAACTATTCGCGAATACGGATTTTTTAAAACGAACTAA
AGCATTTTTTATTCTTGAATTTGTTAAAATGTTGTTTTAATATCATATTTAGCTGATTGG
GTAATAGTTGAATTAAAGCGTTTAGTGTATTTAACGCAAACGAACGCTAAAAATTGTCAT
CGACTTTCCAAGCAAAATAAAGGGCGGCGATTTACAACAGTAGTTGTGTAGCTGAATAGC
TGTGAAACGTAAAGCGGACAGAGCTGGAAATTCTTTTTGTCGCCTGCCTCGGATGGTTAG
AATGTGTCATAGTGATTTGTCGGTGAACAAAGCATCGCGGTTGGTGTGAAACCGGTATTT
AGAATCGTAGACATTCGGGCGTCGCTTATTCCCTTTCCTGTCATGCGTTAACAGGCGGTT
GAAAGTGTCGGGCCTGCATAAATGCATCTGATGTCTGTACCCTATGTACGGCGTCATTTA
GACTAGGAGTCTGATCTTTATGTGATATGTAAATCCCATTTCAACGCCGGCTACGCTTTC
ATCTTTGCTTCACACCTCGAGCACGGACGCCACGCCTACGAATAGAGTCACTCATGAGGA
AATTAAGACTTAACTTATGCGCAACATGTTTTGAACTCCAATTTTATAACGCGAAAATTA
TACCTTAGCCTTGGGTGTGCGTACGGTGTAAAAAGTTACTTTTGGGGGGTTGGTATTTAC
GTCATACTTTAATGGTGATGGAAGTCAAATATTAGGAGTCCCGTTTTCCCTTACATAAAC
ACGCGTCGTCCTTCTTTGATGGCGGAGTGCGCCGAAAAAGGGAGAAGCGTCGGCAGCGAA
AAACGTGCAATTCGCGGCCGCGAGAAAAAGGGAAAGTGAGACTCTGGTTCGCTACTCGCT
ATCCATACACCACACCATAATAGACTGGAACACTTGGACTTGGACGCGTGCTGAGCTCGA
GTCTTGGTGTTTTAGGGCAGGTGTTTGGAGTGTTTCTATTCAAAGAGGTTTCAGTTTGTG
GTTTGTTATGAGAAGTATGTTTAGCTTAAACTTCAAGAAGTGGAAAGCAACATGGATTGT
ATATTATAAGTTTTATAATAATGCTCAGTGACAGATTGCTTATAATACAGTGAAAGTCTA
TCCGTTTACTAACCTTAGAACTCAACTTTTCCATAGAT
