- Region 'REG00001564'
Cis-regulatory Region
Name
Cirobu.REG.Kh2012.C1:822842-824054|Nkxtun3
Short name
Cirobu.Nkxtun3-upstream
Region ID
REG00001564
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Joshua F Coulcher (2023-02-22)
Annotator
Marion Gueroult-Bellone (2023-02-22)
Curator
Marion Gueroult-Bellone (2023-02-22)
822,842824,053
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [822,842 / 824,053] on scaffold KhC1
This 1213bp regulatory region is located upstream of Nkxtun3 (Nkxtun3-Upstream) and is strongly active in dorsal and ventral neurogenic midlines. Genome coordinates are in the article.
Show sequence
Length: 1,212
GATGCATGAGAAGGTGGTTATCTCGCTACGCCCTTCGTCTGCTGTATATGAGCAAACAAT
AACCTTTATGTCCAAACAATGGGCCTTTAGTGATTGGAATGCGTCCGGTGTGCGCTGTCC
GTTCAATGGGGGGACAATTCGAAAAGAAACATTTAAATCAGCGTGTCCGTTTGTTTCCTT
GTTAATAGAACTTAATTACAGGGTGTCTGTTGCTATGATGACAAGATAAGATGGCGGGCG
CTTCTCATCTGGCTTGTTTGGCAACAATTGATCGATAGCCAAATCGCATTATGAGTCATA
ACTAAAATTCGAATGCGGGTGGTGAATTCGAACAAAAACGTCGCGCTAACTCGACAGCAC
TATTGCGTCATAAAAAGTCGTAAAGGCGCGCGCTTAAACGAGTAATTACGGAAAAATTAT
GACATCGTTTAAATTTCCTACAACTGTTTACGTCGTAAGCGTCTCATTCATTGTGGGCGT
TTAACAAAGTAAAGACCGAAAGGTGACAATTATCCAGTAAAACCCAGCCCAGTCAAAATC
ATCAGGGCAACTAAGTATCACTGCAGTTATTATAGCGGTATATATCATGGACCGTTTCAA
ATATTCAGTGGATGTTTAAACTGTTAAAAGTATGGCGTGAACATAAAGAATACGTGGTAC
AGCGTAAATGGGTGTAAAAAAAACTTTAAAAAATGAACAAAATTTTAAAAATTAACAAAA
AAATAAAACAGTAAAAAATAAAACGGTAAAAAAATAAAATAGTTATCTTTTTTTTCTGTT
AAAAAATCCAAACCAATTTAAAACGAATGCAGATAAAAATGGACTAATTGTTTTTAATTA
AATTGACAAAACAGAAATAAGATTTCATTATTTCGTTTTTGTTGTGTGATTATAAAAAAG
CTTAAAAATGCTGTTTGTTTAGATTTTCTATCGCTGGGAATTGTAACAATGCGTGTTTAT
TACAGTTAAGTGCGACATACAAGCGAACGACGCCCTAACTTTCGAACCACTTATGTTGGC
TGTATGCTGAAGACCAAGCTGTATGCGAAGGACACACGCGAGTTATAAAACACGTGTAAA
GAGACAGGGCACCTGAGAGGTGGCGCGCGAAAAACGCTGCAGTTTTTCGCGACGCGAAGA
CTGTGTTTGCGCCCATGGTCGAGTACCTGGACGAGACGATGGAACATCATAACATAAATC
GACTTGAAGCGA
