- Region 'REG00001553'
Cis-regulatory Region
Name
Cirobu.REG.KhC11:1340971-1342802|Fucosyltransferase-like
Short name
FT 1.8kb upstream (Pasini 2012)
Region ID
REG00001553
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Andrea Pasini (2022-11-18)
Annotator
Marion Gueroult-Bellone (2022-11-18)
Curator
Marion Gueroult-Bellone (2022-11-18)
This Ciona robusta Fucosyl Transferase control region drives expression in the b-line from late gastrula stage.
Original comment : The upstream regulatory sequences of the Fucosyltransferase-like (FT) gene become active in ectoderm cells from the 64-cell stage, when the ectoderm genetic programme is already underway and when these cells no longer express Foxa.a, Foxd or Fgf9/16/20.
1,340,9711,342,801
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,340,971 / 1,342,801] on scaffold KhC11
The genomic sequence above slighty differs from the tested sequence of the reporter construct : 615-740bp fragment does not align with génomic sequence (cf sequence of the construct).
Show sequence
Length: 1,831
GCAGCGGTAGAGTTTACTATTATCTAAGAAAGCGCTATCGATAAACAAGAAATATGATCA
TTCTTCACTCTTTTTTTAAGTGTTACTCTCTCAGTACTGACGTTACACCATTTGCTTGTT
ATGCGATTTATTATTGTGTTCTAGTTTCTGTATAAAATATGAACCTTTCATTGCTCGTGT
AGCGCATGCAATACAACTTAAGTAAAAGAAATACCTCGTGGCTATTTATTGCCCTACTTG
TTTCATCTACCTTTTTCGAAGCTTAGCACCCGTTGATTACATAACAATACCAACAACAAT
CAAAGAGTTGCTGACTAAAAGCTTGGAAAACATGGTTCAAGAAATTGAAGAGTGGTCACA
AAACAATCGTTCCGTGGCGCGATTAAAGTGCCGTTGGCCATCGGCGACTGCCGCCCATAT
CATCACGACGTGCCCGCGAGGCATTGTGGCATAGAGGTTTTTAATTTTTATGCAAATCCA
AAAATCTGTGTTTTAATGTGCAAAAGCGAAACTATATATTTTAAACTTTAAAGCTTGGAC
CCTTACAGGAATAAATGTATATTATTTCGACCAGTACAAAATCTACCTTATCTTTATTTT
GCTGGTGTATTGAGTTCATATAAACCAATCATACGTTTTTAGACATACTTATTTATTGTT
ACAAAAAAGTTCATGCAGAAAGCCAAATCCAAAGTTACCCTCAATTATGTAGAAACAAGC
AATCATGACACACGGCGACATAGTTTTCTTTAATGACGGTCAGCACAACAATCAATAATA
TTACGACAACTACATAAACATGTTAGGCTACTATTAATTGGTTGTTTATATTTTAATATG
CGTCTACATATCACGTGTTACATGCAAAGCGACTGGTAAATGAGACCAACAAAACATTGT
GGTTAATTGATTAGCGAACGCAGTTTCCTAAAGCCAGTGACTCCGCACTCGCCCGGAAGC
GCAATATAATAAACAGTACCTGATTTTAACGGTTATATTTAAAACAAGGATTTTACCAAT
GGGGATAGGGAAAGAAGGGACATAATTCCATATACTGTTTTTTCGTCACATTTGGTATTG
AACCAAGAATATTTACAGACTTTTATAATCGTCACGAGTCACGACTCTCAACAAACGTTG
TCAATTTAAAAACGTGCTATATACATGGCTACCTCTATAACTATAGAGGGCGCCATAGCT
ATATACAATGCTATATAATGTACAAAAAGTTAACTAGGGAAATAAAGTTTTGAAATGGCC
CATACGGAAACATTACTGCAAACAATGTTAGGGTCCGTATCTTTTTGTTAAGACATGTAT
TTTATTTAATTTCCATTTGTTAGAATTTTAAAGCTGATTTCCGTCCAATGCTTCACTGGC
TGGGCTTCCTTTAGTGGAATAAATTCGACGAACACGTGACCGAACATCTCTCCAGTAAGA
TGTCGAGTATACGAATGGATTGATGGAGCTATTTATTGGAATAGCAACGAATGTGTAAGC
GGAAAATATCTTCGTCCAACCTTTAGTATACTCCTGGTAATCGCATCCACTTTGTTCGAT
CAAACTTGTCTCTATAACGTAATAAACAGATAGACAACATAAAGGAACCCATGACAGGAA
GTCGGTTACAATGATAACCATTATTCGTCGCTGTAACGAGAAATTGTCTTGTTCTCGTTT
ATTCCGCCGTGTAGATTCGTCACAGTTTTTATTGTTTCCAAATAAGCAAATGGCTTGTCT
ACATGAGAACGACGTTGTGGCATGTTTCCAAATTACGATATAAGCAATAGCTATGTAGAA
AAACAAGATCAGGTTGTACGTTATGATTGCC
