- Region 'REG00001550'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C6:153549-155781|ETR
Short name
ETR_Intronic (D'Aniello 2011)
Region ID
REG00001550
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
D Aniello Enrico (2022-10-26)
Annotator
Marion Gueroult-Bellone (2022-10-26)
Curator
Marion Gueroult-Bellone (2022-10-26)
This 2236bp enhancer is located in ETR (KH.C6.128) second intronic region. It is able to recapitulate ETR endogenous expression pattern throughout the CNS of Ciona robusta embryos.
153,549155,781
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [153,549 / 155,781] on scaffold KhC6
This 2.3kb enhancer was amplified using the following primers : pETR 4 gaacactatacgttgatgcgttatgc and pETR 5 : cgatgctggcctcatttgaccgtatg
Show sequence
Length: 2,233
cctgtaaaaagaaagggtaacatagccatacggtcaaatgaggccagcatcgattttaac
aatccataaaacctattttaaactaaaccgcagtggagaaagtattttgtttggtcatta
acattaacaaaggcgtatggaaattcaaattcgttgatttgtaacccttatggaacatcg
gtaggcaaaataatttgccggaagattttttaattatagtactgtggggtaagatgggac
acctcatattatccaaatattaaaatcgcgtttttagcaattaacaacggtctatgagag
tcgtgagaatatggttttacaaatctttaaatgttctttgtttactaccaaatgggacga
gaaaatagaactactatataatgtctagaatctacatttgacaaaacctgtgtgttttta
atatattttcaattattttacgaactatttatgataatatgactggagctacatcttcaa
taacggtcgtaggcttttcttatataagtaaacataatgttattttaaatttaacagcgg
tgagtatacaataaatatccggcttaaaaaacaatagtaatatatttagcctacatttca
tcatgtgtttgggaatgtatattcacgagatttttgttttgttttttcattaaatcagcc
acgttctagtagattaaaacgtattaggacatctgtatagtgatgttaagagcgatcgta
ctgttaattggggcagaatgaatgcattgtataagaactaggttaaacatgattgataaa
cctgccgtacagtcatgactttacagcacagaatagcgaaaactggcgggcatataaaac
tgaatatccaatagcattggataataaatgactcaaaacaaaggtatttgatatgaataa
ttcattgcgtacactttgaaaattagtgacggataaagaattgtaaaaaaaagaaagcgt
gttctattgtaagtaccgtgcgtggatgacgcgacgaacgccctatttaaagtgacgctg
tcccagctttacgcgtggcagattctattgtaaaccgtacaaaagcaccgagtgacatat
gcgagtgcgaacgacgagacgtacaccatatgctctcatatagaaaagcaggtggccttc
aagaaaacaaggttctgtaccctcgtttaccataaggcgtatgtatatactaaaatatgg
gaaatactcattttggactacttgcaatttgcgattcttttattttaaagcacgatacgt
tgtattgcatgagtgcacggcgtaacatagcgttttaagccccttttccgatggcgtacc
gttttatacgaagcttgtgtactacatatttgtatataaaaactttaattccaaaaatat
ggtagtaaaaagtatgctttatttcaaaaacttgatatattttagttaacattaaagtag
gttacttctgtcttactaagaaatcatttgagtaccgcaaatggtaagcgtaccatatgt
tgaggtacatgataggaagaaataaaatgttatgtatattactgtggggtaagatgggat
atcgttagcacctaattcctatatttcctgaacgtgttttgaacaattaacaacgttctt
ttagagtcgctgggctacggttacgtaaatttgttaatattctttgtttactaccaatta
ggacgagaaaagagaataaaagcattaccgatgttattacaacatacgatgtattggtag
atttataacgaacgccagtatgttatttttcaaaacaggtcgactattcaatatatttga
gattataatgactcataacgcagtgaaattgcaatttatggcgttaatttggaccccagt
aaagcaaatgccgcgtgtgggtcgattctacgttagagccaaccaatcacaacagcgtat
tgatcctctgttacgtcacaatccaaccgtggtcgataaaccgatcgagaattgccatta
attcgccagcggtcgggacgactttcggataacacgggtattaacaagcaatgctactcg
tacaggatcatgtcttggaaccagggcattacgcgaatgtacaaatacatttgagaaacc
cattagttaaagtgcatattaataatcgcttcagcataacgcatcaacgtatagtgttcg
taattattgtattacaatacagcaggtgctttgtaattaaagtcacttagaaacgtggtt
ggaaagcctattg
