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CIS-REGULATION

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  1. Transcript 'Cisavi.CG.ENS81.R3.1...' > 
  2. Transcript 'KH2012:KH.C14.538.v1...' > 
  3. Transcript 'Phfumi.CG.MTP2014.S5...' > 
  4. Transcript 'Haaura.CG.MTP2014.S9...' > 
  5. Region 'REG00001531'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C12:1331487-1333133|Rx

Short name

B1.6_Rx-2952/-1299

Region ID

REG00001531

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

D Aniello Enrico (2022-10-06)

Annotator

Marion Gueroult-Bellone (2022-10-06)

Curator

Marion Gueroult-Bellone (2022-10-06)

View position in WashU

Description

This 1647bp genomic element is located -2952/-1299 upstream of Rx (KH.C12.152). It has no enhancer activity at the tailbud or larval stages.

Hierarchy of Regulatory Regions

Modification of Ci-Rx -3kb/1 by deletion

Regulated gene(s)

KH2012:KH.C12.152 (PAX6; RAX; RAX2)

Construct(s) made to test this region

CONS00001604: p.Cirobu.REG.KH2012.C12:1331487-1333133>GFP

Show in situ data
Overview of functional TF binding sites in this region

1,331,4871,333,133

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,331,487 / 1,333,133] on scaffold KhC12

This 1647bp genomic element was amplified using the following primers :B 1.6 up : ATCCCATATTTCCCAATGG and B 1.6 down : CTTTCCATGGTTCCATTGTG.

Show sequence

Length: 1,647

ATCCCATATTTCCCAATGGTTGTTTTTACCAATTAACAACGTTCTTTTAGATTCATTTGA
ATATACGGTTATATAGTTATAGGTAAATGTTCATTGTTTTGTATCAAATTGGACGATAAA
AGAGAACCATACGTGTTTTTAAAATTTGAGTGAAACTTGTCAGTATTAAATTTTGGAAAT
TTTAACCCAGTAATTGTCTCGCATTTGTAAAATAGACGTTAATTTTCCTTTGGCCTTAGT
AACTCGTTTTCGTTCCATTGCGCACGGCGCCCTAACCGGCATTTTCGTATTAATATTCAA
GAGCAGAGCAGCAGGTTTTAATTCGCTCCTCTGATATAATATACGGTGCGCTCTAATTTC
TAGCATCTCCATAATTGCTCTTTGAGGGCAAAAACGTCAAACGTGGAAACAATAAATATT
TTATTCTCTCGACTGTTTATTCTGATTTTCTGATTTGGCTGGGGCTTCGTTATTTGGAGT
AATCTCTAGGCCGAGTTTAAATATTAATAGCTCCAAAGTGTTTCAAATAGCAGTTATTGC
GCAGGGTAATGAAGTTTTCGCTGGATTTAATAACCCCCCCATTTCCCCAATTGCAATTTT
CTATGTGATCTGTTTACCCAAGTCTTTGCTTTTAAAAAAAGAAATTGGAAACGCGTGTCG
CATTGAAAGCTGAACCCTCCACGGCCAATCCGCACATGCTTATTATACCCGCGTTATCTC
ACCAGTGTATTTTGTTTCTGGTGATCTTCTCTTATTTTAATTTTTAAAAAACGAGCGAAA
TTTTAATCGCATTAAATGCAGCTGTATACCGTAATAGCCATAGAATTAAAATACCTGACA
AATACTGAAGAAAGCCTAAGATTCTATGTTAAAAAAAGTTAAATTAATATTACCAAAGTT
GTAAGGCAAAGGCATACCTGTAAAAAAATGTTTGAAAAATACGTGGGAACAAACACGTAA
GGACATATATTACTGTGGGGTAAGATGGGACACCTTTGGCACATATTATACGAATTTCCA
AATCGTATTTTAAACAGTTAACAACGGTCTCTGGGAGTCGTAAGGATACCAATTGGGACG
AGAAAATATGATGAAAAGATGTCTTATCTTTACAACCAAACCATACAACATAAAAACACG
GGAAGTTACTGTAAACGTTGGTACTTATAACATGCTTATGGATAAAACAGAAGTATAGGC
GTTACAACCGAGAAACAGTATAATGCAATAGGCCATTTAAGTAAGCAACATTGAAGTTCT
TATCCTAAAAAATATATCATACACAAAATCCTTTCGAATTTTTCAAACGGAATAAAAAAT
CACTAAAAACGGTTTAAATTGTTCGATTTTACGTTAAATCACATTGATTTATAAATAAAA
CTACGACGCCCTATAGAAATGAACAAAACGAAAATGGCCTTGTTATGATGCATCAGTGAC
GGCAGTTGAGGGGATAAAAAGCCGTAGCGTATGTTTGCTCTGGCTTGATTAACTGCTAAT
TCAGATGGAATTTTAGCCTATCAGCAGTGCGACTGGATTTTAATATGCTAAATCTATGGT
TTTAAATAAGTAATTTAGTGTTCGTGTAAATAATATACCGGACTTTGTTTAGTAATATAT
CGTTGTCCACAATGGAACCATGGAAAG

Reference(s)

D'Aniello et al. (2011). Onecut is a direct neural-specific transcriptional activator of Rx in Ciona intestinalis. Dev. Biol. 355(2):358-71

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