- Region 'REG00001526'
Cis-regulatory Region
Name
Cirobu.REG.KhC11:4100254-4102439|Vsx
Short name
n/a
Region ID
REG00001526
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
100bp deletion of the largest fragment.
4,100,2544,102,451
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,100,254 / 4,102,451] on scaffold KhC11
This 2.3kb regulatory sequence spans from the 2nd intron to the downstream intergenic region of Vsx.
Show sequence
Length: 2,198
attcttccttcgagcattgactttgctgtgactcatgagtaacttttgactgaacggttt
tcttatgcatgcctacaatacaatataacgtaattaagcaccgtgttacacgttcaccag
taatctataatcggtttacgccttaccaataagccagggtgcaaatgcatcgtttttgag
gccgtccttgtaacaggcattaataacagtatcgggtagaggtatagaatggcgaaccat
tgcaccgtacaagccgtattctgccataacgctactcttgccccaacaattctctcgttt
ccgccattttgcgcggcggttccgaaaccaaacctgaagggaaagaaatcatgttcgtta
aaatagataatggatttgaatagaattggtccaacatttagaaatacaaagttaacccag
aagaagtacaggtctcacctataatggtgtaactaatttaatcgcgtcagtttaatcgag
cttggtacccactgggaataagcgacaaccaatgttaccataattatgtacgtagatcgc
agattaaaaagtgattccacacatgtgtggtcgataattaattcgaagccaacagcgatt
gaaccaatagataaattgctttaatcaattcaatgactgactttacgtttacggcctatt
atttcaaatcaataaccaaggaacgaaaatgacaaacaggctttaatttgganggctttc
gtaaatttaaacnatcaacactgctgttgttttttaaaccgaagtaggccctatagtata
ggccctatacagtggggtaagatgggtagcgttatcgcataattatgtctcgtatttcct
gaacgggatttaaataactaacactaacactctgaagggttgtgaagattctgttaatac
actctattaaatactaaatgggacaatgaaataaaatgatacgtaggccatcttacccca
ttctactaaacatttgtttttacctgaattctgtcttcttgtaaatttgcgtttttcgct
aatttttctctcgtttctgcatccgggtaatgagcaagatcaaatgctttttccaaatgt
tcaagttgagcgcttgtgaaaattgttctgccgcaaattatagtacattaattaaaaatc
cttgatttaactaccgacctctataccccatggataccccatggatatctacgtaagcat
aaatatatacaatatgtaaaccattaaggcggcttatacctccggggaagtagcaggatc
caaaatctggtagtgtccatgcggtatagcaccttgggggttatagagtaatgggccaat
cttggcctaaatcctaggaccaatggcgtgccacgctgccgggccccacccatacagaat
aaaatacatcaatatagcgagtataataagaaatagagagcatttgtcgagaaagtactt
tgtttaaaaccacacgttgggaaagttacctgctacgtcgtttctttagtttatcactga
gttccttactgttgtttctagattgggtaacttctgtaaaaaacgcgttgcttttttaat
tcaattcattttaaagattttttagttgaaaactgtaatcatttgttaattttacgaata
aaggttttcatgtgtattagtagatactaaagtgtttttgttttcattattacctaaaca
gaaggcagagagttcgattaagaaaacgttctgtcatttgtaagtgttacaacatgacat
tgatacattgctagcgccgccattttgttttctattattctaaagcagcgaagcgattgg
tgaattaagcgaatcgtttccgatgcacttattgtgagtagataatgcctcttgtcggag
ctatgcgcgttcttttcaagcgacagcagttgattcgccacgagagccgattgagcgaat
gaaactgcgattaatttgttattaaagatatcttcgcaacacaagcaattgtgaacgtcg
gtataaggaacatatgccagacggtcgcaaatgtaaacgatacaaattaccgcagggtgc
attgctcaatgaggtgaacatgatggaatcgagcaaagcgggattaaattcggatcaaaa
tctagcaaatggaatatgcaaaatataaatttttgccaacccctttttcaaataatgtaa
tcccatgaacaatattgaagccatttatcgactgtaag
