- Region 'REG00001518'
Cis-regulatory Region
Name
Cirobu.REG.KhC5:42519-45326|Nkx6
Short name
Nkx6 - 1st to 2nd intron (Stolfi and Levine 2011)
Region ID
REG00001518
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Alberto Stolfi (2020-11-21)
Annotator
Marion Gueroult-Bellone (2020-11-21)
Curator
Marion Gueroult-Bellone (2020-11-21)
This 2.8kb region spans from 1st to 2nd introns of Nkx6. It recapitulates Nkx6 expression when cloned upstream of the basal promoter Friend of GATA (bpFog)
42,51945,326
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [42,519 / 45,326] on scaffold KhC5
This 2.8kb region spans from 1st to 2nd introns of Nkx6. It recapitulates Nkx6 expression when cloned upstream of the basal promoter Friend of GATA (bpFog)
Show sequence
Length: 2,808
TCGCAAAAATGCGCCGACAAGTTATTGAGTGACCAATGAAGAAAAATGAAAAAAATGCGC
CGACAAGTTATTGAGTGACCTGGATTTTCCAAAACATGCAAATATTTTACAATGAAATGC
TAGATTTAAACTATTAGCATTAGCAAACATTTACATTGAACATTTCAAAAACAATTTGAG
GTTGCGATAACTTTTATTTTATATACGTCTTTATATCATTTGTATACGATATATGTTGTG
TAAAATGGCAATCCGAGACAAGACTTATACGTTTTTAGGTTCACCTTCGACCATCGTGAT
GGAAAAGTACGGACGAAAGAAACATACACGACCTACTTTCTCAGGGCAGCAGATCTTTGC
GTTGGAAAAAACCTTTGAACAAAGCAAGTACCTGGCTGGACCTGAACGAGCTCGGTTGGC
ATATTCACTTGCAATGACGGAGTCGCAAGTTAAGGTAAGGGTGAAAGATTAATTTCTAAC
AGTTATGTTAATGCTATATGGCATGCTTTGTTAAATTTCTAATTCCACCATACACCTCCT
CAAGTACACCAAGGTTTTTCAAACTGATGCCACGACACCGAATCAAATATGCCGCAAAGC
GTTTTTATAAACTAACAATAAAAAGTTGTGCATTGACGCTAAACTTAAGTTTGAGAACAA
CTTCCATTAAACACACTTAACCAATAAATACATCGGTTGTTTATAATATTCGAAGTAACT
TAAACAAAAAAAAACATAATAAAAGCTATTTCAAGTATCCCATCACATAAAGCTTGGCTT
TATCGCCTTGTCGAGTTTATACCTAAGTTGATAAAAGTAAAAACTATTTGATAAATTTAC
AAAAATTTAGATTTAAAATATTTTTTTATGATTGATTTTGTAGATATTTTAATATCCATG
AAATGTATTATAGAGGGGCTTCTTTATAAAAATACGATTAGCGAAAATATTGAATTTTTA
GACGCAAATTGCTCATGGATAAGGCTGAATTTCGAAAAGAAATATTTGTTTAAAATTCAA
ATCGTTAGCAGAGGGGCGGAGTAAAATAGATTAACGTTTGCGTGAACCTTCATTGAATGG
ATCACTGGGCGATAATTTCATTCCGAGATCGACATTTTAAATTATTAAACTGCACAGAAA
GTTGTCGCGATTCGTCCGTTAAGTGCTCTCGTGGGTACCAAAGGTAACTAACCAGATATA
TTGTGATAAGCGGCATCTGCTACGGCAACAATAATTATGTCAATACATGGTTGGTATCTG
CTACGAAAATTAGATTTCTTTCCTTCATGTTAAGATAACCCCCTTTTTAACAATTAACGA
ATCTTGTTTCGATCGAGATCACATTGTTGGAGCGAGAGGTCCCGGGACTCTCCTCAATTA
CTCCGCGTGTCAAACTGTAATTGGCCCAATAGGCTCAGTGACCGTTAATCTGCACCCCTT
CCTAGCCAGTACGCGGTATACCTGACACACAGGTTATTAATCACTGAAAGAAATCGACAA
ACGCTGATTAGAAAGGAAATTTTATGTTGGATCTTCGTCGGATACAAGTGGTCAATAAAA
TTATAACACGTGACAATAGTTAGCGTGAATTGCGCAATAAATCTTTTAATACCGGAGGTC
ATATACTAATTATTGATACCGGACTATTCCACGTGCAATAAATTCACCCTTCTGCTCAAT
TAGGCAATTAATTTGATTAATTTGATATATTTACATTATATTTATGTGAATTGGGTCATA
TATCAGCTGATAAAGATAATCTGAGTGCATCGTTGTTAGCTAAGCTTTTTCAATCACTTT
CTCATATGGATTAAATGATTCGAATTACCAATCGGTATTTTAGATAGCAAATGATCTGGT
ATTAGTGTAATATGCCCTGATAACAACTCATGAAATACAAGAAAATGTCGACGATAAACG
ACGGTGCTTCTAGAATTGGGTGAGAAGCGAGATCGTTATTTGTCACACGTCTTTTATTTA
CCAAGTTAAACAATTGGCTTTTTATTTATCATCACGCGCTCATCAACTGCCATGCTGTTG
ACATTCCGAAACAATAGCCATTATTCGCATGAACTGTCCACGACGCGATGTTGCCTAATT
TGCAAGTGTTGCGTAAACTCGAACGCAACTCATGGGAAGTAGTTGCACTGAGGTGAAGCG
TAAGGGAGATGTATTGTCAATTGTACTTTTTTATTTAAAACCCTTTTCAAATAGAGTAGA
AATTAAAACAGTTATAAATGTATAATATGAAACTAAACAGATATTGCAACACAAACACGC
GTTGCGGGTATTAGTACGCTCTACTACGTCGCTTTTTTCCCCCCCGGGGAAAAAAAAAGA
TGAAATAACGGTGAACGCAAATGCAAAGTTACAGAAAAAACGCACACGTAGAGTCATAAC
GGTATAAATCACGGAAAATCTGTGTATATAGGTTCGAAACCCTATAGAGTGCTTAACAGG
GCACACCATATTAGGCCATTTGCGTACTCATTTATTACAAACATATCTAAATTTATAAAT
TGGGAGACTGTAAGTTCGCGATACGAATAATCATTAATTCTGTAACATAAACATGCTTTT
GCCAATATTTAACATAAGGAAAGCATAAAATATGAACCGCTCAAACAAGCAGAGTTTTAA
TATATATACAAAACTTTGTCATCATATATACCTAAACACAATTAAACTAAGCATACCACT
ATGTTGACGTGTTTAGTTTTACCAAATGTATTCATCGTTCTTGATTCATTAGAAATTATT
AAGCCCCCCGATAAACCGCCGTCTTGTCCATTGGTAGGTTTGGTTCCA
