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CIS-REGULATION

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  1. Transcript 'Cisavi.CG.ENS81.R85....' > 
  2. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  3. Clone 'citb033p24' > 
  4. Region 'REG00001514'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C8:201869-203368|Atonal

Short name

Atonal 1.5kb upstream of TSS (Zhao 2020)

Region ID

REG00001514

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Di Zhao (2020-11-12)

Annotator

Marion Gueroult-Bellone (2020-11-12)

Curator

Marion Gueroult-Bellone ()

View position in WashU

Description

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C8.175 (ATOH1; ATOH7; NEUROD1)

Construct(s) made to test this region

CONS00001566: p.Cirobu.REG.KH2012.C8:201869-203368>Kaede

Show in situ data
Overview of functional TF binding sites in this region

201,869203,368

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [201,869 / 203,368] on scaffold KhC8

This 1.5kb region located upstream of Atonal TSS is able to recapitulate Atonal WT expression in nearly all sensory neurons, including bipolar tail neurons. A 1,074 bp Atonal promoter region was PCR‐amplified from Ciona robusta genome using the following primer sequences: forward:TGCGGATCCTTAAAAGTGGCTAAATTATC reverse: GATCGCGGCCGCCCTTAGTTTTTTTATAAA

Show sequence

Length: 1,500

TTAAAAGTGGCTAAATTATCATAAAAAAAATATAAAAAAAATTCCCAAAATAATAATCAC
CCACAAAGTAACATACATGGCAACTCGTAAGCTGGCACGAGGTATATGAAATATAACACC
TGTGTTTAACGACTGTCGTTTTCCGGCCACGCTATTGGATAAAGTAAGTTACATTCATTC
AATTATTTAGGCAATAGTCTCATATAACATACTCAATTCATTTCTACTGGCTTTAAATCG
AAAACCTAAATATCAAAAATGTGTAAACGTCGCGCCCGGACCGTTGCCTATAGAGGGCGG
CATTAAATTTGATCCGCGAGTTGTCATGATATTTAGACTTACCTTTTCCGCAGTCGCGGG
CCATATTTAATAGCGCCCAGGGAATTTAACAGATTTACAAAACGCACACCAAATCCGATT
GCTCACATTAACTAAGCAAAGTTTGAACCAAAAATCCAGATTCGTAGTTTAATAACAAAT
AGATTTAGTTTTGCGAGAGCATTAAAGACTTTTTTGCTGGTGAAAAGGTATGGGTTAATA
TTGTTTAAATTCGAGTGAAAATTAACACAACTATTTGTTTGTTTAGCAACAAGTTGCAGA
GCATTATTAATATATAAAATTAGTTGGTCATCTTGCCGCATTTTTTTTTATTTCTATATT
ATTATATGTATTTAATAATAACAAATACCATTTAAAAATATTCTCTTTTGATACTTCGTT
ACAGCAACATCAACTCGGTTAAACCATAGTATACTGAAGTCACTTCACTGAAGTCACTTC
AGTATACTATGGTTAAACTGCATAGTTGAACGAGTGGGTAGCTTTTTAAATGGTAAAGAT
CCGTTCATAAAATTTAACGGTCTGAAATTTAAAGGGTAAATGAATATTTAAGAAGAAGCA
TTTTTCTTGTGATATATTTTTCATGGATGCCATTAAATAATTCATGCAAATTCCGTTTAA
AGCGACTGATACATGGGACTTTTACACAGACCTATCGTCATTTAAACTGAAATTTTAGTC
TTGCTTCCAGCGGTTTTAATTTAACCCAGTAGATTTTTCTATATAGGCCATAGACATTAT
AGTTTAGTTTGCAGTCTGAAATGCACCTTTTAATAAAATCATATATAATCGGGTTAAAAC
CTTCTGTAGTATAACCTTTATTCTTTACTGAAACAAAAGAATTGCAAGAGCAATTATCGT
GTTGACGAAACTCATTAAATATTGAAACGCATCTTCCTTTTTTTCGCCGAGTGTCTGTTA
AAAAGGCGGGCAACTGCTGTTGTTTAAATTTCGTCACTACGTGATATATGCAGCAAAGCC
GTGTATTTTACAGATCAGAATCGTTCTACGTTTACAAGAATAGGAATACGAAATGTACGC
TAATAATATAGTTTTAAAATAAAACCAAAGACTGTATTTAGTATATTTATGTTTTGTATA
CTTTTTAGGTTGGTTCCTCAATACAAAAATATTTATTAACAGTTTATAAAAAAACTAAGG

Reference(s)

Zhao et al. (2020). Comparison of differentiation gene batteries for migratory mechanosensory neurons across bilaterians. Evol Dev ():

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