- Region 'REG00001511'
Cis-regulatory Region
Name
Cirobu.REG.KhC12:4104860-4105729|tyr
Short name
tyr 870bp upstraem of TSS (Squarzoni 2011)
Region ID
REG00001511
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Paola Squarzoni (2020-11-12)
Annotator
Marion Gueroult-Bellone (2020-11-12)
Curator
Marion Gueroult-Bellone (2020-11-12)
4,104,8604,105,729
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,104,860 / 4,105,729] on scaffold KhC12
The 870bp region located upstream of tyr TSS is able to recapitulate endogenous Ci-tyr expression pattern in pigmented cells precursors from neurula stage. It was amplified from genomic DNA using the following primers : Ci-ptyrF GCTTGCCTTTTGAGAATTACCAGTTCCTAT Ci-ptyrR CGGTCAAGTACACTGTAAACACTGTTAAA
Show sequence
Length: 870
AAGTACACTGTAAACACTGTTAAATACATCTTTGGAAGTGCTAGACAAATGTGTGAACAC
AAGACATAACTTGTGCCTTATATACCATCTGATTTTACAAATGCATTCAGTAATCCTTAT
TTCTTATTCCTATCACGAGTTGCGTGTCGGGATTAGCTTTATGGAATTTAATTAAAATGA
AACGTAAAGGAAATGGTGGATTAATGAATCTCATATGCAAGGGTTAACGTTTCCTATTTA
TTCGATATGTAAATCATGTGAGAAACCTTGTAGTAGCATTTTGAAAGTGAAATAATTACC
TTCATCACATTGTAGTATATGAGACGGTTTTGGAATATTAGGCTATATTGGTAGTGTTTT
ATCAGTATACTACGGTTATTGCACTGTTAAAAATAATAGTTTATTAAGAAGAATATATGT
ATGTCGGAGGCAGAAATACCTTTAAGTTCAGATCAATGAGACGACGACCGTCTCGAGAAA
TTATTGCATTGAAACCAGGCGAATACGCGTGCCAGTATTTTTGTAAGTTTCAGAGACTTG
GTTTAAAATTATTTCGGCAGTTCAGTTGATTTCTGCAGAAAAACATTGTAAGCGAATGAT
TATAGAAGTGGCACAGAACAGGTTAAAACAAAAGCAAATCTTATAAGACATTGACGAATA
CTTACGTTTCTGTTGCTGCAATAGAAACCGGTTTACTAAATGTTGAATATTACAATTAAA
CGAGATAAGACAATATTAACTTCGTTGACATATTTCAGACTACGATATACTGTTGACGCT
ACAGTGTTTCATATCCGTCGCGTACAGGGGTTTCACTGTATACAGAGAATAAACAGCGGC
AAATAGGAACTGGTAATTCTCAAAAGGCAA
