- Region 'REG00001510'
Cis-regulatory Region
Name
Cirobu.REG.KhC5:2277494-2279057|tyrp1/2a
Short name
tyrp1/2a 1.5kb upstream TSS (Squarzoni 2011)
Region ID
REG00001510
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Paola Squarzoni (2020-11-12)
Annotator
Marion Gueroult-Bellone (2020-11-12)
Curator
Marion Gueroult-Bellone (2020-11-12)
2,277,4942,279,057
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,277,494 / 2,279,057] on scaffold KhC5
1.5kb region located upstream of Tyrp1/2a TSS. This cis-regulatory module is able to recapitulate endogenous Ci-tyrp1a expression pattern in pigmented cells precursors from gastrula stage. It was amplified from genomic DNA using the following primers : Ci-ptyrpF GCCTAATTGTGTCTGATAAGAAAATAATAGG Ci-ptyrpR AGTAAGCGGTTAGCGATTGTAGTCGTCG
Show sequence
Length: 1,564
GCCTAATTGTGTCTGATAAGAAAATAATTGGGTGGTTATGTTTTTTAAACAAATTAAACA
AGTTTTGTCAGGCAGTTACAGCTGCACACAAGTATAATGATTTCAACATTACAACCTGTC
TCTTAAAATAAACTGGTAAAAATGTAATGTCTGAATGTGAGCACTGACACCAGGTTTAAG
CAGTTACTGTGTTTTTTTTCACTTATCTTACACAAAATACTATTGTCTAACCAAAACATT
TAACAACCAATCACAACACCCCACAAAAAATTAAAAAAAGTCTTGTCGAATTTCAAAATC
AATTCCACGCTGTTGATGTAATGATGTTAAAAATCATTATATACATCATTAAAAACTGTA
TATACAGTATTTATTATTAGGCTATACCTCAGACTCTAAAATCTACAACAACTGGACCTA
AATATTACTGAACAACTATATAAAAATTACGTAATACTGAATATTATACGAGATCGGTTA
AAAATCAAAACACAATCTATATGCATTGCCCCAACAAATATATAACAACACGCCCTATTT
AAGTTGCTATTGTTGCTACGAACTACGATATTGGAATGCATTTTGACGAAATAGTCGATT
TTATACACTTAAATCATAAGGTTTTCCGACACAAGATACTCAACAAAAAAACTAAATTTA
CAACTTAAAACGATATTTTCCGTGGAGCTGCGCAATATTATGGTCACGATATTTCGCTTA
ACACATAGGCTACTGCATAGCACAAACCGTATGCCTAAATTCACTCAAACTCTCACCTCG
CTAACACATAGCATCAGTGCTGAATTTGATTGTTTGGCCGTCCCGTTTAAATAGAATCTT
CACTCGGATTCACGAGGATGGCCATATCTTTCTTGTTTCATTCTGTTCCAACCGATGTGA
ATATGGCCGCCAAGAGAACATGTGTTTCAAACGGTTTTAGACTCAGAACAGTCCCACGAA
ATTCCGAGAAATTTCTAGAAGAGATAGAATGGGACTTTACAACAATGTTATTTCGTGACA
CTGTAGCGTTTAAATAAAGACCACGACTATAAAATAACGCCAACTTCATAAAAATATGCA
CAACATTCATTATGGTTTTATTTAAACATAGCAATTCATTGTTTAAATTGCGCAATAAAG
TTTGTAATCAGAACATCCGAGATTACTAATACCAAGCAACTTTTTTATCAATACCGATCA
CACAACCCGCAGTTATTACATTGTCGTTTAAGAAGGAAATCCACTACAGAACAAACGAAC
AAATAAGTTGCTGGATTTGAGTAACTTGTGACTCCGGTTAGGCTTAGCTTTTTAATCCGT
TTAATTCATCACTCCCATGAAAAGTTTCATTATAAAAGCTGCGAAATCAGTTCGAACAGC
AGAGCAGTGAAAGTACCTCCACCAGTAGCAACTAATACAGTAAGGAAGGCAAAATCGAGT
GGGTATATGGAGCGGCAACGTCTCTATTTCAAGCTCATCGGTTGGTTTGCATGTAGAGAT
AAACTACCCAAGTGTAGTTACCTAGAATATCATTTACGACGACTACAATCGCTAACCACT
TACT
