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CIS-REGULATION

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  1. Region 'REG00001504'

Cis-regulatory Region

Name

Moocul.REG.CG.ELv1_2.S35518.100167-101580|Dmbx

Short name

Moocul.Dmbx -1390/+24 (Lowe 2018)bis

Region ID

REG00001504

Status

Curated

Origin

natural region from M.oculata

Type of Activity

regulatory_region
(extended_promoter)

Author

Elijah K. Lowe (2020-03-28)

Annotator

Marion Gueroult-Bellone (2020-04-23)

Curator

Marion Gueroult-Bellone (2020-04-23)

View position in WashU

Description

Hierarchy of Regulatory Regions

Regulated gene(s)

Moocul.CG.ELv1_2.S35518.g01764 (DMBX1; PHOX2A; PHOX2B)

Construct(s) made to test this region

CONS00001551: p.Moocul.REG.CG.ELv1_2.S35518.100167-101580>unc76::eGFP

Show in situ data
Overview of functional TF binding sites in this region

100,167101,579

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [100,167 / 101,579] on scaffold S35518

This cis-regulatory sequence spans from -1390 to +24 from the predicted endogenous start codon (atg in minor cap in the upper sequence) of Dmbx. This sequence is active in developing descending decussating neurons (ddN).

Show sequence

Length: 1,413

TAGGTCAAGACCTAAGACACCAAACTGCTGACCAATCTGTTTTCAAATCGACTTTTTGTT
TCGTGAATAAAATACAATTAATTTGTGAAATCCAATGAAAAGTAATCGTTTTGTCGTTCT
GTGATTAATTAAATACATAATTAATAATTAATTCCTCTTACTCTTGAAGTAAATCAGAGA
AGTGATCTTAAACTTATCCACCGTGACCATTAACTCTGTCTGTTTAAAGATTTTTATGCA
CACACTTGGCATAAGTTAATTAATTTGTCGTATCTTTTTAATTAGCTATTCAATTGTCGT
GATAGATGGTGAATGGAGCTAATAGGAAATGGTATTTCGGAACATATCGGCCACTAAATA
ACCATGAAATTACTGAATATTCTATAAAATCTTGTGGTATAAAAGCTGAAGGAACACGAA
AGTTTAACGACCCGTATTAACAGGCAAAGATTAGTTGGCACCTGTACAGAGTACACGGTG
GTGGGTCGGTTATGTAAAAAACCTGTGGTATATCTAANGGATTAACTAAATTTCGTAATA
TGGATTACGCGAGAACTAAAAGCATTATAACCTATTTTATTTAACTCCTTGAAGCGACTT
AGTCCCGTGCGATCTCGGAACCAAATATACATTTTATTTATCTTGTTCAGAAGAGATGTT
ATTGAAGCGTTTCATAATATCCAGTTAATCGGATTAGGCAGAAGGTCTTACACAAAAGCA
CCTGCGAAAAAATGTTCGTTGAAAAGGATGAATGCCGAACACCTTCCCNAAGTAAACCGA
ATATTTAGAAAAACATCACCGGATTAAGTCGCAGTTTGTTTAACTCGTGTTTTGAGCTCG
ACTGACAATCCGGGAAGGATATCTTAATGCCAAAATTGTGAAATAATGCCTCCAATTATC
GCTCAACACAAAATGAGTATTAGGTAATTTTCAGCCGTTATTTTATGTCTTTTCTTTTGG
CTTAATGGCAATCGGCTTAGAACTAGAATATTTTAAAAATTAATGTGTATCCGTAGCCCT
CAAACATTTTGTTGTCAGAAAGTTTCAAAAATATTTTTACAGGCTTATACTGTGGAGATT
AGAGCTGACTAATCCACCCTTAAGCACCGCTGGGATCCACTTTTTTTTATATAACAGAGT
ATTTATAAAGCCATTTGCGATCCGCAGTTAGACGATGAGAGATGACCTTCTATGAACACA
GCACGTTCAAGCTTCAGGCATAAAGATATGTTATTTCTGCATTTAGACGGATTTAAATAG
TTGCCAACTTAGAGGAGGCGGAAGAAAACGAAGAGCTAATCCAATTATTTTGTGATTTCA
ACGTTGTTTTACAGTGAGGTCAAAATAATATATTTTTATTATTATTTCCACGTGCTTGAA
ATAAGGAAAatgAACTCGGATTTGTTCTACAAG

Reference(s)

Lowe et al. (2018). Developmental system drift in motor ganglion patterning between distantly related tunicates. Evodevo 9():18

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