- Region 'REG00001475'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S50:168458-169207|FoxAa
Short name
n/a
Region ID
REG00001475
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(enhancer)
Author
Alicia Madgwick (2018-06-08)
Annotator
Marion Gueroult-Bellone (2018-06-08)
Curator
Marion Gueroult-Bellone (2018-06-08)
This 750bp sequence, located 4,5kb upstream of FoxAa (S50.g01891), drives reporter gene expression in endoderm and mesenchyme.
CONS00001497: p.Phmamm.REG.CG.MTP2014.S50:168458-169207>LacZ
168,458169,207
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [168,458 / 169,207] on scaffold S50
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : cccgaaatgccagcttaac Reverse : aaaacagaaacaaagcgcatc
Show sequence
Length: 750
cccgaaatgccagcttaacagcctatgcggaccgccgtggatggttgaaaaatacgcgtt
tcaagtgcaggtcgcattaaaagcattgaaatgtcagcatgtgcccaagcggcgttgttg
acacagcagtcgttccattctcacctcgtgccagcgaatagcaacttgactaataatggc
cggtttcacctgagcctcaacaatgcgtgagttttactggtcagtttaattcactccggg
tctgcattaaggtttaccggcgttgtggtcaacagttggtcaaacacgcagtttgggacg
aatcgtcgcatatgcgaacttcaaagttagcagtggtctttggcgtttgtattgaaacgc
atataacggcaacgcaacacattaaaattcgcttttttgccacaatttttgaatgaaaac
ggtaacaagcctttgtgtttgtaaaatgcagcgtttaaaaacattattatggcgcaaatc
tgtgcaaattattattaacgctaggctgtgcaaatcaaaaacagttttgtgaatgagttt
tacagtggtctaaccttattttgttgcgacgcaatcactcgagatcccaagaagcaaaca
actcttgaccctaatgttttatcgtcgactaaactgctcttgactcgccgctgctatttg
ctcagctaaaattcccaggaacggaccaacttggtttgaaaattgggtgacggattatcg
ataccgtttgatgcgctttgtttctgtttt
