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CIS-REGULATION

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  1. Region 'REG00001466'

Cis-regulatory Region

Name

Phmamm.REG.CG.MTP2014.S229:90811-91212|Neurogenin

Short name

n/a

Region ID

REG00001466

Status

Curated

Origin

natural region from P.mammillata

Type of Activity

regulatory_region
(enhancer)

Author

Damien Gailly (2018-05-30)

Annotator

Marion Gueroult-Bellone (2018-05-30)

Curator

Marion Gueroult-Bellone ()

View position in WashU

Description

This 402bp sequence, located downstream of Neurogenin (S229.g05747), is active.

Hierarchy of Regulatory Regions

Regulated gene(s)

Phmamm.CG.MTP2014.S229.g05747 (NEUROG1; NEUROG2; NEUROG3)

Construct(s) made to test this region

CONS00001488: p.Phmamm.REG.CG.MTP2014.S229:90811-91212>LacZ

Show in situ data
Overview of functional TF binding sites in this region

90,81191,212

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [90,811 / 91,212] on scaffold S229

This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : ctccactcaactgaaaacagca Reverse : aacactcaccgtttccgaat

Show sequence

Length: 402

ctccactcaactgaaaacagcaaaacattcctatcgacatgtttttaatttgatcgattc
cacacaaaaacagaccagcatcggcatttaaaagcgtttggttaagatgtcccatttcca
ggccacacaaatcgacaatatttcaatcttatcgttcgcatcaaacaaccaccgacgttt
tcctcacgcctgctatcaccgacatttgtcacttgttacatcacaatgggcccttatcgc
gtcacagtgctttggaacacgcgtgtcgtatcaaagcaacttggagtgagcagagaatta
agtgtgagtagataaaactcgtgcttaagtgcgcacacttgacttatcgctcactttaag
tgttccttgcgatatttgagtaattcggaaacggtgagtgtt

Reference(s)

Madgwick et al. (2019). Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians. Dev. Biol. 448(2):71-87

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