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CIS-REGULATION

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  1. Region 'REG00001465'

Cis-regulatory Region

Name

Phmamm.REG.CG.MTP2014.S229:90042-90375|Neurogenin

Short name

n/a

Region ID

REG00001465

Status

Curated

Origin

natural region from P.mammillata

Type of Activity

regulatory_region
(extended_promoter)

Author

Damien Gailly (2018-05-30)

Annotator

Marion Gueroult-Bellone (2018-05-30)

Curator

Marion Gueroult-Bellone ()

View position in WashU

Description

This 333bp sequence, located downstream of Neurogenin (S229.g05747), is active.

Hierarchy of Regulatory Regions

Regulated gene(s)

Phmamm.CG.MTP2014.S229.g05747 (NEUROG1; NEUROG2; NEUROG3)

Construct(s) made to test this region

CONS00001487: p.Phmamm.REG.CG.MTP2014.S229:90042-90375>LacZ

Show in situ data
Overview of functional TF binding sites in this region

90,04290,374

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [90,042 / 90,374] on scaffold S229

This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : aacaacccactaacgccact Reverse : cacttccgcctgaatcctac

Show sequence

Length: 333

aacaacccactaacgccactagtggcaacaacatcgcacgatcttctattttaggcgcct
ttaatatgcacgtgacaatcaccaagcaacagcaaggctttgatcaaggtgtttgtgcca
caacaatggcgtgtgtgatgtttcgaacgagtttattgttccacaaattaagttgcttag
ccgttgtctgttctcaccgtaatgcgattacatcaaagagccgaccttcggcgtgacctc
aagacgacattaatgccattattacgtaaacatgacgtcataattcgatttcaggtgacc
cacgcgcgcacctgtaggattcaggcggaagtg

Reference(s)

Madgwick et al. (2019). Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians. Dev. Biol. 448(2):71-87

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