- Region 'REG00001447'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S597:19759-20374|TTF1/Nkx2-1
Short name
n/a
Region ID
REG00001447
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
inactive_region
Author
Alicia Madgwick (2018-05-30)
Annotator
Marion Gueroult-Bellone (2018-05-30)
Curator
Marion Gueroult-Bellone (2018-05-30)
This 616bp sequence, located in the first exon of TTF1/Nkx2-1 (S597.g10419), is not able to drive reporter gene expression.
19,75920,374
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [19,759 / 20,374] on scaffold S597
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : gttaaggcccgaaggaccat Reverse : tatgacggaaggtcggctac
Show sequence
Length: 616
gttaaggcccgaaggaccatttagccgccaatatttgttcaagcattaaatatacttgcc
ttggcgctgcgcatagttaacgatttgctaagcgagccgctgcgcgtggggaaatgtcct
tgagtcccaaacaaacgacaacgacgccattttcagtaacggatatcctcagcccgctcg
acgaaccttacggccagcacggtcccgcgacggtagacgacggcggcaacctgcaaacgc
gacgagaaattcacgactcgtacagcagtgcgtctatggatccaggacattcggcagtag
catccagtggcttgcacgtaccgagccttggcagttctctgagcaccggatcaacctcgc
ctcccatgtcgtcgctttaccgacagccgatgtctatgggcacgccgccgcaccacgggg
tgcaccatcatcagcaaattccggcggcgagcgtaccttatcagagtatgccaaccgcgg
cggctgttgctgctggcatgaattccggctacaacctccacccaatggcacctgctcctc
aggcgacttttcacacgatgccgggatcaggatcgtcagggtactgcaacggaactgtag
ccgaccttccgtcata
