- Region 'REG00001443'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S597:19236-19686|TTF1/Nkx2-1
Short name
n/a
Region ID
REG00001443
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(extended_promoter)
Author
Alicia Madgwick (2018-05-30)
Annotator
Marion Gueroult-Bellone (2018-05-30)
Curator
Marion Gueroult-Bellone (2018-05-30)
This 451bp sequence, located upstream of TTF1/Nkx2-1 (S597.g10419), drives reporter gene expression in the endoderm.
19,23619,686
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [19,236 / 19,686] on scaffold S597
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : caaacatcaaattcccgaca Reverse : acttctaatgctcgctgcac
Show sequence
Length: 451
caaacatcaaattcccgacatgaacgaaatttgccgacttgctagataagagtttccgtc
ggcaacgacagccgatgatcaacttccgatgtttgtcacctttcatcattcgcttgtatg
tttgctttcggcctcgaaacaagtcgtcgtcactaattacaagcgagccgcatccaccgt
cagccgcagaccattttccgtcgatccgatgacgtcacttgggccgctcagtcatttttc
cccttcccctttcgcgcgtctacctggtcgcctcgcactgcattctagcctccctttttt
cgacgggacgccgcgacgggactcggcccgccagaaaacagtgtcgcgggttgacaacaa
tgcgatgtcgcacaacagaatggttcagttcaggcaatgttagcgtgaggaatattgtca
gggacagacaagtgcagcgagcattagaagt
