- Region 'REG00001428'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S1711:8255-8854|Nodal
Short name
n/a
Region ID
REG00001428
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(extended_promoter)
Author
Alicia Madgwick (2018-05-29)
Annotator
Marion Gueroult-Bellone (2018-05-29)
Curator
Marion Gueroult-Bellone (2018-05-29)
This 600bp sequence, located upstream of Nodal (S1711.g15500), drives reporter gene expression in endoderm, TLCs, mesenchyme, notochord and muscle.
8,2558,854
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [8,255 / 8,854] on scaffold S1711
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : cacttaagctgaagcggaca Reverse : ttttcattttccatgtttatggcttt
Show sequence
Length: 600
ttttcattttccatgtttatggcttttgcgcctgttaatttgttctgaataaattaacac
catataacaaatcatgctactgcgccgactgtttcaatttaaacctgttgggcgaatgtg
atacttgtcaccttttctcgatccatttatacgatgtcccggcgggcattttttctccgc
acaatgggatgaagctctcgtgcagtctggatgggaacaggacccgcgttcattttttct
cctctagcatcttgccgcctggcgattcggccagagagagggagagagagaacgatttgc
ccgtatgccaagccttgatgatgttcgtgcaggtgacaatgtaaacacagtaaggcctct
gtgccattggtccagcgctcattgattttgccctcagtttttgttgcgtctatgggtcac
tgtttacatttctctcatttgcggccgaattaaagagcttggttcgtcagaaaagccagc
gacttgcaacgaacctacagccgtaacatgaggttaccgtatgtcatggcagacccataa
ttgttttaaataaaacagatgtgaaacctggtggtatatttgtccgcttcagcttaagtg
