- Region 'REG00001418'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S50:171674-172329|FoxAa
Short name
n/a
Region ID
REG00001418
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(enhancer)
Author
Alicia Madgwick (2018-05-28)
Annotator
Marion Gueroult-Bellone (2018-05-28)
Curator
Marion Gueroult-Bellone (2018-05-28)
This 655bp sequence, located upstream of FoxAa (S50.g01891), drives reporter gene expression in endoderm, mesenchyme, notochord, trunk ventral cells, muscle and sensory vesicle.
CONS00001440: p.Phmamm.REG.CG.MTP2014.S50:171674-172329>LacZ
171,674172,328
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [171,674 / 172,328] on scaffold S50
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : tgtcaatatccttgttagtcacaaaa Reverse : caactttatcggcacacacag
Show sequence
Length: 655
tgtcaatatccttgttagtcacaaaaaactgttgcgcagacgaacacgatcagtttccgt
ttaataagcaaacaacacaccttcacttcctaaattccaccgttcgacacacaaacaaac
aaaatggaggcgaaagtgagaattattttgcaccggtaacgttatcccgtagagtgactc
tcgctacgtaaaaaattttgtgaaaggaagttttgccgaaaatgcttgatagctctgctg
tgccttccgttattactgccgaccaaagcaaatatttgaggatgttttgaaatgcggcat
ttatagccaatatttttcgcaagttttaaagtgaatgtatgtgtgtaaaattgataccta
gtttcgtgcatgtagttgtctttattactaaagagaaaaaactttaagcatttctggcat
agccctattatcaaacgtcgtgattcctgaggaataaaagccaataatcttctgaataaa
ctgacccaagattgtacacatttcatatttacagaggctttacctcaaacttggtcatat
agacatagaacgatcaacaaacagctactgtttgaggcggtcaacatatagcttctgttg
gcagttgtcagaataaggctaggtttgaaggttactgtgtgtgccgataaagttg
