- Region 'REG00001417'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S50:170660-171585|FoxAa
Short name
n/a
Region ID
REG00001417
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(enhancer)
Author
Alicia Madgwick (2018-05-28)
Annotator
Marion Gueroult-Bellone (2018-05-28)
Curator
Marion Gueroult-Bellone (2018-05-28)
This 920bp sequence, located upstream of FoxAa (S50.g01891), drives reporter gene expression in mesenchyme.
CONS00001439: p.Phmamm.REG.CG.MTP2014.S50:170660-171585>LacZ
170,660171,579
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [170,660 / 171,579] on scaffold S50
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : tgatttgtatgctaaggtttgga Reverse : gcttcttgtgtttctggcaaa
Show sequence
Length: 920
gatttgtatgctaaggtttggattccatggtattcgaaattttatctagtttctagacaa
tcagaaaactgtatcccggcaaaatactttttgcaaacattcgactgtcggagtcaaggt
ctcggcctctttcaggcccataagcattcacagcagcgtctcagttctttatgaaagcca
tcaaaagcggcgaccctgtcattgctgtttggtgcgattctctcgtgctggtgtggaaga
gtccacggacgaagtcgcgattcgatcctttacgcaaacactgcgctctttttaggcccc
caatactgcaataaactaacaacgtctggtgatttgttgccgtcagagactatgttaaat
ctagttatccactgtgttgcattttgtaccaggatgtctggcaggacaaattagtcgcat
atgttatctattaacgtgaaagcatatagtttatgtgcaacatttgaaataacgttatta
gattgtcgttattagaattttgcaatgtttgttttccccaaaacataaacgctatacttt
agaacatgttaactgctacattaaaattgataaaattatgccaactgtttttgcaaacca
ttttagactctggagccattttagaactaagttggctccaaaacaaacacgaatctagga
acttcacaagtatgcgatggtccaagacaaatacaaattcaatcaatgagtctttgaact
tgataaaaatgtgttcattagtgggtttctaacatcatggaagcagcactatacagttta
gaaccttttaatttcgcttttacccgatagcccatgataaagtcagtcgtgtggtcgttt
gataaggatatctatggtttcaaagaccgctttaatgttgaacatctaacacaaagttgt
ttgccagaaacacaagaagc
