- Region 'REG00001416'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S50:168459-169203|FoxAa
Short name
n/a
Region ID
REG00001416
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(enhancer)
Author
Alicia Madgwick (2018-05-28)
Annotator
Marion Gueroult-Bellone (2018-05-28)
Curator
Marion Gueroult-Bellone (2018-05-28)
This 744bp sequence, located upstream of FoxAa (S50.g01891), drives reporter gene expression in endoderm and trunk ventral cells.
CONS00001438: p.Phmamm.REG.CG.MTP2014.S50:168459-169203>LacZ
168,459169,202
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [168,459 / 169,202] on scaffold S50
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : ccgaaatgccagcttaacag Reverse : cagaaacaaagcgcatcaaa
Show sequence
Length: 744
cgaaatgccagcttaacagcctatgcggaccgccgtggatggttgaaaaatacgcgtttc
aagtgcaggtcgcattaaaagcattgaaatgtcagcatgtgcccaagcggcgttgttgac
acagcagtcgttccattctcacctcgtgccagcgaatagcaacttgactaataatggccg
gtttcacctgagcctcaacaatgcgtgagttttactggtcagtttaattcactccgggtc
tgcattaaggtttaccggcgttgtggtcaacagttggtcaaacacgcagtttgggacgaa
tcgtcgcatatgcgaacttcaaagttagcagtggtctttggcgtttgtattgaaacgcat
ataacggcaacgcaacacattaaaattcgcttttttgccacaatttttgaatgaaaacgg
taacaagcctttgtgtttgtaaaatgcagcgtttaaaaacattattatggcgcaaatctg
tgcaaattattattaacgctaggctgtgcaaatcaaaaacagttttgtgaatgagtttta
cagtggtctaaccttattttgttgcgacgcaatcactcgagatcccaagaagcaaacaac
tcttgaccctaatgttttatcgtcgactaaactgctcttgactcgccgctgctatttgct
cagctaaaattcccaggaacggaccaacttggtttgaaaattgggtgacggattatcgat
accgtttgatgcgctttgtttctg
