- Region 'REG00001415'
Cis-regulatory Region
Name
Phmamm.REG.CG.MTP2014.S50:172500-172959|FoxAa
Short name
n/a
Region ID
REG00001415
Status
Curated
Origin
natural region from P.mammillata
Type of Activity
regulatory_region
(extended_promoter)
Author
Alicia Madgwick (2018-05-28)
Annotator
Marion Gueroult-Bellone (2018-05-28)
Curator
Marion Gueroult-Bellone (2018-05-28)
This 460bp sequence, located upstream of FoxAa (S50.g01891), drives reporter gene expression in endoderm, TLCs, mesenchyme, notochord, brain, TVCs, muscle, nerve cord, epidermis and sensory vesicle.
CONS00001437: p.Phmamm.REG.CG.MTP2014.S50:172500-172959>LacZ
172,500172,959
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [172,500 / 172,959] on scaffold S50
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : gtgtaactttcaccttctatttcagtt Reverse : acgcgtttaaattgcacactc
Show sequence
Length: 460
gtgtaactttcaccttctatttcagttagaactgtgtcttgcaaaatttagaatcccatg
aaaagtgtgaggttgcgatacgttgatagtacctagcttatcgcaagctcgtgcgggcac
aggcttgatcaagatgcattacgtcacgcatcaagacagtggcccgccaataagggcgtt
tctaaagcatgcggccgctggtcagacctgggccagccaaggcgcgagattggaccgcat
tgatcatcgaagagaaaaaagaaagggactggacggaactggtgtccaatataaaccact
gaatgaccagacggaatcattccagcctttgagctcatagtagtcatttcaaagcatcag
caatcagttgtgaaacggtagcaaaattactagacgaaatacgaatagccgtttatacct
tatataactaagggttagcgagtgtgcaatttaaacgcgt
